New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5455113	49 (0.980)	4 (0.080)	4/318	NT	7.8%	coding (480/762 nt)	PP_4792	conserved exported protein of unknown function
	?	AE015451	= 5455238	48 (1.020)					coding (355/762 nt)	PP_4792	conserved exported protein of unknown function

CACATCGCCCGGCTCTCTGGCAGCAGCCCGCCAAACGGCCGCGCATGATCGCGCCCAAGGAACCCCACCGGCGCCGGCACCACCTCGAACCCCGCCTGTTCAAAACTCCAGCGTGAGCGCTGCATGTGCCAGGCCTGGGTCACCAGCACCACCCGGCGAAATCCCAAAGGCTGCAGCACCTTGGCCGTCAGCTGAGCATTTTCCCAGGTCGTGCGGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5454892‑5455113 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggctggccAAGGCTTCGGGCCTGCCAGTGTTGACCAGTGGTGGGTTGCATTACGGCACGCCGCCCAGCGAGGCGAGGCTGATGGCGGAACGCTTGCATGAAGATTTCGCTGTCGAGGTGAAATGGCGCGAAGAGGCCAGCCGCACGACCTGGGAAAATGCTCAGCTGACGGCC  <  AE015451/5455238‑5455074                                                                                                                                                                                                                                                                                                                                                                                                     CACATCGCCCGGCTCTCTGGCAGCAGCCCGCCAAACGGCCGCGCATGATCGCGCCCAAGGAACCCCACCGGCGCCGGCACCACCTCGAACCCCGCCTGTTCAAAACTCCAGCGTGAGCGCTGCATGTGCCAGGCCTGGGTCACCAGCACCACCCGGCGAAATCCCAAAGGCTGCAGCACCTTGGCCGTCAGCTGAGCATTTTCCCAGGTCGTGCGGCTGGC                                                                                                                                                                        >  2:850245/1‑221           GGCTCTCTGGCAGCAGCCCGCCAAACGGCCGCGCATGATCGCGCCCAAGGAACCCCACCGGCGCCGGCACCACCTCGAACCCCGCCTGTTCAAAACTCCAGCGTGAGCGCTGCATGTGCCAGGCCTGGGTCACCAGCACCACCCGGCGAAATCCCAAAGGCTGCAGCACCTTGGCCGTCAGCTGAGCATTTTCCCAGGTCGTGCGG                                                                                                                                                                             >  2:333743/1‑206                                                                  CACCGGCGCCGGCACCACCTCGAACCCCGCCTGTTCAAAACTCCAGCGTGAGCGCTGCATGTGCCAGGCCTGGGTCACCAGCACCACCCGGCGAAATCCCAAAGGCTGCAGCACCTTGGCCGTCAGCTGAGCATTTTCCCAGGTCGTGCGGCTGGCCAAGGCTTCGGGCC                                                                                                                                                          <  2:859606/170‑1                                                                                                                                                                   CCCAAAGGCTGCAGCACCTTGGCCGTCAGCTGAGCATTTTCCCAGGGCGTGCGGCTGGCCAAGGCTTCGGGCCTGCAAGTTTTGACCAGTGGGGGGTTGCGGTACGGGACGCCGCCCAGCGGGGGGAGGCT                                                                                                >  1:656347/1‑131                                                                                                                                                                               AGCACCTTGGCCGTCAGCTGAGCATTTTCCCAGGTCGTGCGGCTGGCCAAGGCTTCGTGCCTGACAGTGCTGACCAGTGGTGGGTTGCATTACGGCACGCCGCCCAGCGAGGCGAGGC                                                                                                 >  1:409446/1‑118                                                                                                                                                                                 CACCTTGGCCGTCAGCTGAGCATTTTCCCAGGTCGTGCGGCTGGCCAAGGCTTCGGGCCTGCCAGTGTTGACCAGTGGTGGGGTGCATTACGGCAC                                                                                                                     >  2:147969/1‑96                                                                                                                                                                                                                   ggGCGGCTGGCCAAGGCTTCGGGCCTGCCAGTGTTGACCAGTGGTGGGTTGCATTACGGCACGCCGCCCAGCGAGGCGAGGCTGATGGCGGAACGCTTGCATGAAGATTTCGCTGTCGAGGTGAAATGGCGCGAAGAGGCCAGCCGCACGACCTGGGAAAATGCTCAGCTGACGGCC  <  2:703636/175‑1                                                                                                                                                                                                                                                                                                                                                                                                     CACATCGCCCGGCTCTCTGGCAGCAGCCCGCCAAACGGCCGCGCATGATCGCGCCCAAGGAACCCCACCGGCGCCGGCACCACCTCGAACCCCGCCTGTTCAAAACTCCAGCGTGAGCGCTGCATGTGCCAGGCCTGGGTCACCAGCACCACCCGGCGAAATCCCAAAGGCTGCAGCACCTTGGCCGTCAGCTGAGCATTTTCCCAGGTCGTGCGGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5454892‑5455113 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggctggccAAGGCTTCGGGCCTGCCAGTGTTGACCAGTGGTGGGTTGCATTACGGCACGCCGCCCAGCGAGGCGAGGCTGATGGCGGAACGCTTGCATGAAGATTTCGCTGTCGAGGTGAAATGGCGCGAAGAGGCCAGCCGCACGACCTGGGAAAATGCTCAGCTGACGGCC  <  AE015451/5455238‑5455074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.