| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | AE015451 | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5555608 | 0 (0.000) | 49 (1.000) +GCC |
33/332 | NT | 100% | intergenic (‑84/+87) | PP_4887/PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| ? | AE015451 | 5555609 = | 0 (0.000) | intergenic (‑85/+86) | PP_4887/PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer | |||||
ATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGCTACTGGCCGTGGTCTGCATCACCACCTCAGCCGAGCGTTCGGCCTGGG > AE015451/5555373‑5555804 | aTGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAgcg < 1:693707/236‑1 (MQ=255) gccagccGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgt < 1:505993‑M1/236‑20 (MQ=255) tCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacc < 1:440947‑M1/236‑34 (MQ=255) cGAGGTCATGGCGCAGTAGTCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttc < 2:918828‑M1/215‑15 (MQ=255) cATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaa < 1:407989‑M1/233‑66 (MQ=255) aTCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgaca > 2:785926‑M1/1‑167 (MQ=255) tCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacc < 2:571625‑M1/199‑34 (MQ=255) tCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaa < 1:617327‑M1/236‑76 (MQ=255) cGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacc < 1:93680‑M1/185‑34 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggc < 1:785929‑M1/233‑89 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaa < 1:356384‑M1/208‑66 (MQ=255) cTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttctcgacacaaggcccacaaa > 1:300578‑M1/1‑140 (MQ=255) tgtgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTTGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaa < 1:181574‑M1/204‑66 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggct > 1:678459‑M1/1‑132 (MQ=255) ggTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCGCATAGCGgccccggcaatttccgcgtgtaggcaaccaacctggtgctgcc > 2:257306‑M1/1‑124 (MQ=255) ggTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGTAGGGgccccggcaattt > 2:449712‑M1/1‑124 (MQ=255) gggCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaa < 2:566614‑M1/180‑66 (MQ=255) gACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc < 1:551079‑M1/235‑141 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaag < 2:335177‑M1/170‑77 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacaccaggcccacaaaggaccgcgcaggct > 2:422251‑M1/1‑70 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgccgctgagccgcccgat > 1:409518‑M1/1‑70 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtc > 1:871963‑M1/1‑70 (MQ=255) tCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccgga > 1:550821‑M1/1‑68 (MQ=255) tCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccccgcaggcttcaggcc > 1:636867‑M1/1‑68 (MQ=255) ccGACAGCAGAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGGGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgcc < 2:175101‑M1/197‑133 (MQ=255) aGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccag > 1:825047‑M1/1‑55 (MQ=255) cGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaa > 1:392620‑M1/1‑47 (MQ=255) cTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtctgcatcaccacctcagccgagcgt > 2:568244‑M1/1‑45 (MQ=255) cTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtctgcatcaccac > 1:653075‑M1/1‑45 (MQ=255) aGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtctgcatcaccacctcagccgagcgttcggc > 1:563575‑M1/1‑42 (MQ=255) aGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtctgcatcaccacctcagccgagcgctcggc > 1:141529‑M1/1‑42 (MQ=255) aGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcg > 1:574951‑M1/1‑42 (MQ=255) aGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaa < 2:755984‑M1/72‑31 (MQ=255) aGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaa > 1:755987‑M1/1‑42 (MQ=255) tgGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtctgcat > 1:131086‑M1/1‑37 (MQ=255) gggAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtctgcat < 2:678456‑M1/206‑171 (MQ=255) ccTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgt > 2:704024‑M1/1‑28 (MQ=255) ccTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgt < 1:704027‑M1/47‑20 (MQ=255) cTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgcc < 1:332090‑M1/159‑133 (MQ=255) cTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgcc > 2:332087‑M1/1‑27 (MQ=255) ttGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggccgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagca > 1:685222‑M1/1‑26 (MQ=255) ttGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggccgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagca < 2:685219‑M1/171‑146 (MQ=255) ctcgaaAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggcc < 1:519440‑M1/177‑160 (MQ=255) cgAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtctgcatcaccacctcagccgagcgttcggcct < 2:422019‑M1/214‑197 (MQ=255) cgAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgcca < 2:849317‑M1/151‑134 (MQ=255) gAAGGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcag < 2:28645‑M1/110‑94 (MQ=255) ccGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcag > 1:400018‑M1/1‑10 (MQ=255) ccGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcag < 2:400015‑M1/103‑94 (MQ=255) gCATAGCGggcccggcaatttcggcgtggatgcaacaaacctggggctgctattcagccctttcgcgacacaaggcccacaaaggaccgc < 2:364858‑M1/90‑83 (MQ=255) gCATAGCGgccccgacaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcaccttgctactggccgtggtctgcatcaccccctcagccgag < 1:128619‑M1/194‑187 (MQ=255) aGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctg > 2:424948‑M1/1‑4 (MQ=255) | ATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGCTACTGGCCGTGGTCTGCATCACCACCTCAGCCGAGCGTTCGGCCTGGG > AE015451/5555373‑5555804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |