New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6050758 =	58 (1.160)	3 (0.060)	3/326	NT	5.3%	coding (1620/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	AE015451	6050799 =	51 (1.060)					coding (1661/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase

TCGGAGTCCATCAGCCTGGGCGAGCGCCTGCTGAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCG  >  AE015451/6050579‑6051008                                                                                                                                                                                                                             |                                                                                                                                                                                                                  tCGGAGTCCATCAGCCTGGGCGAGCGCCTGCTGAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTg                                                                                                                                                                                                      <  2:567739/234‑1 (MQ=255)                   ggCGAGCGCCTGCTGAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAg                                                                                                                                                                                   <  1:668838/235‑1 (MQ=255)                     cGAGCGCCTGCTGAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAg                                                                                                                                                                                   <  2:409764/233‑1 (MQ=255)                       aGCGCCTGCTGAACAAGGTACTCACTGGCTTCGCCAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCGTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTg                                                                                                                                                                              <  1:139399/236‑1 (MQ=255)                         cgcCTGCTGAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGt                                                                                                                                                                            >  1:927646/1‑236 (MQ=255)                            ctgctgAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTAGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGt                                                                                                                                                                            >  2:574819/1‑233 (MQ=255)                                 gAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAATGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCa                                                                                                                                                                       <  2:521661/233‑1 (MQ=255)                                 gAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTgg                                                                                                                                                                                                     >  2:459612/1‑203 (MQ=255)                                    cAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTAc                                                                                                                                                                  <  2:637951/235‑1 (MQ=255)                                               cTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGACGGCGAACAGCTGCCGGCGCCAGAAGGCCAACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGcc                                                                                                                                                               >  1:37403/1‑227 (MQ=255)                                                    ttCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGc                                                                                                                                                  >  2:659167/1‑235 (MQ=255)                                                     tCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGt                                                                                                                                                                            >  1:605384/1‑208 (MQ=255)                                                         cagcagCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCt                                                                                                                                                                         >  1:162504/1‑207 (MQ=255)                                                                   gagaAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAg                                                                                                                                                                                   <  2:752238/187‑1 (MQ=255)                                                                            ggccgacaggtggccgacaatcgggtcacccgggatcggcgtgcagcacttggcgtagctgagcaccaggccttcggtgccgcggatcgccagtgggccttctggcgccggcagctgttcgccttcggccgacagcaggcggcgcCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTg                                                                                                                                                                              <  1:740275‑M2/38‑1 (MQ=255)                                                                            ggccgacaggtggccgacaatcgggtcacccgggatcggcgtgcagcacttggcgtagctgagcaccaggccttcggtgccgcggatcgccagtgggccttctggcgccggcagctgttcgccttcggccgacagcaggcggcgcCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTg                                                                                                                                                                              >  2:740272‑M2/146‑183 (MQ=255)                                                                            ccccAGGACCGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCgg                                                                                                                         <  1:132747/236‑1 (MQ=255)                                                                               cAGGAACGCCTCCCGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCt                                                                                                                                                                    <  1:229390/190‑1 (MQ=255)                                                                                     cGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCa                                                                                                                                                                       >  2:808530/1‑181 (MQ=255)                                                                                     cGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCa                                                                                                                                                                       <  1:808533/181‑1 (MQ=255)                                                                                         tCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGGGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTcggcc                                                                                                            >  1:207630/1‑236 (MQ=255)                                                                                          ccAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTcggcc                                                                                                            <  1:817983/235‑1 (MQ=255)                                                                                           cAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCg                                                                                                                                                                                      <  2:162503/160‑1 (MQ=255)                                                                                                tATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAgg                                                                                                     <  1:884673/236‑1 (MQ=255)                                                                                                 aTTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGTTGACCCGATTGTCGGCCACCTGTCGGCCGGCaatc                                                                                                     <  1:659170/235‑3 (MQ=255)                                                                                                     tcGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGCCCCACTGGCGATCCGCGGCAc                                                                                                                                                                                        >  2:218669/1‑148 (MQ=255)                                                                                                      cacccgggatcggcgtgcagcacttggcgtagctgagcaccaggccctcggtgccgcggatcgccagtgggccttctggcgccggcagctgttcgccttcggccgacagcaggcggcgcCAGAAGGCCCACTGGCGATCCGCGGCACCGAAg                                                                                                                                                                                   <  1:491922‑M2/33‑1 (MQ=255)                                                                                                      cGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATg                                                                                                >  2:66732/1‑235 (MQ=255)                                                                                                       gCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATgg                                                                                               <  1:459615/235‑1 (MQ=255)                                                                                                          gAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGt                                                                                           >  1:684707/1‑236 (MQ=255)                                                                                                          gAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCGGGTGCTCa                                                                                                                                                                       >  2:4617/1‑160 (MQ=255)                                                                                                           aGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCt                                                                                                                                                                         >  2:36426/1‑157 (MQ=255)                                                                                                                     ggAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGCACAGCTGCCGGCGCCac                                                                                                                                                                                                                 >  2:171546/1‑106 (MQ=255)                                                                                                                          tCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGc                                                                           <  1:66732/236‑1 (MQ=255)                                                                                                                                    ccTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCaa                                                                      <  1:483299/231‑1 (MQ=255)                                                                                                                                      tGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGGACCGCAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCg                                                                                                                                                >  1:272216/1‑155 (MQ=255)                                                                                                                                       gCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCCCCTGt                                                                                                                 >  2:40333/1‑185 (MQ=255)                                                                                                                                         tCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCCAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                 >  1:368545/1‑231 (MQ=255)                                                                                                                                         tCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTg                                                              >  2:485079/1‑234 (MQ=255)                                                                                                                                         tCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGaa                                                            >  1:384387/1‑236 (MQ=255)                                                                                                                                           gAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCCACATCAGTGAAAt                                                          >  1:44115/1‑236 (MQ=255)                                                                                                                                           gAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGa                                                             >  2:450974/1‑233 (MQ=255)                                                                                                                                           gAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGACAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTcggc                                                                                                             >  2:531327/1‑185 (MQ=255)                                                                                                                                              caggccttcggtgccgcggatcgccagtgggccttctgGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTcggcc                                                                                                            <  1:740275‑M1/145‑1 (MQ=255)                                                                                                                                              caggccttcggtgccgcggatcgccagtgggccttctgGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTcggcc                                                                                                            >  2:740272‑M1/39‑183 (MQ=255)                                                                                                                                               aCATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCg                                                       <  1:816375/235‑1 (MQ=255)                                                                                                                                                   cttcggtgccgcggatcgccagtgggccttctgGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAGGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTg                                                                                                                                      <  1:491922‑M1/119‑1 (MQ=255)                                                                                                                                                     gCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCAc                                                                                                                                                                                        >  2:573932/1‑100 (MQ=255)                                                                                                                                                            cAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAACTCCGCCACAAcc                                               >  2:647045/1‑230 (MQ=255)                                                                                                                                                                   aTGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtgcgt                                  >  1:611338/1‑236 (MQ=255)                                                                                                                                                                       ccTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCa                                                                                                                                                                                         >  2:248700/1‑81 (MQ=255)                                                                                                                                                                       ccTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGcc                                                     <  1:826168/213‑1 (MQ=255)                                                                                                                                                                            ggggTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCGGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGc                                                                                                   <  1:310518/160‑1 (MQ=255)                                                                                                                                                                                   cgcgcCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGcc                  <  1:450977/236‑1 (MQ=255)                                                                                                                                                                                    GCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                 <  2:826165‑M1/188‑1 (MQ=255)                                                                                                                                                                                      GCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCg                                                       <  1:752596‑M1/196‑1 (MQ=255)                                                                                                                                                                                      GCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtgc                                    <  1:34463‑M1/215‑1 (MQ=255)                                                                                                                                                                                             gctgTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTg                                                                            <  1:910963/168‑1 (MQ=255)                                                                                                                                                                                                gTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACa           <  1:601076/230‑1 (MQ=255)                                                                                                                                                                                                       gAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAACAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTgg    >  2:883625/1‑230 (MQ=255)                                                                                                                                                                                                       caaGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGcc                                                     <  2:507345/180‑1 (MQ=255)                                                                                                                                                                                                                      ccGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCg  >  2:331429/1‑217 (MQ=255)                                                                                                                                                                                                                            cCAGAGGGCCCACGGGCGACCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGaaa                                         <  1:270775‑M2/171‑1 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                  TCGGAGTCCATCAGCCTGGGCGAGCGCCTGCTGAACAAGGTACTCACTGGCTTCGACAGCAGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCTATTCTCGCCGAGTACCGCCTGGAGCTCATAGAAGACCTGCTCGAAGACATCGGCCTGGGCAACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCG  >  AE015451/6050579‑6051008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.