| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 4,146,136 | C→A | 6.6% | P73P (CCC→CCA) | PP_3651 → | Sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 4,146,136 | 0 | C | A | 6.6% | 219.9 / 6.1 | 61 | P73P (CCC→CCA) | PP_3651 | Sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base C (26/31); new base A (2/2); total (28/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.57e-01 | |||||||||||
GACCGGCAAAGCACATGGCTAGATGGCTAGACGGCGGCGGGCAAATGGCCGAACGCATCCGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGCCATGATGGCGAGATTCTGGGCATGCTCGACACGGTCACC > AE015451/4145904‑4146355 | gACCGGCAAATCACATGGCTAGATGGCTAGACGGCGGCGGGCGAATGGCCGAACGCATCCGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTg < 1:538683/236‑1 (MQ=255) cGGCAAAGCACATGGCTAGATGGCTAGACGGCGGCGGGCAAATGGCCGAACGCATCCGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGcc > 1:89178/1‑236 (MQ=255) cacaTGGCGAGATGGCTAGACGGCGGCGGGCAAATGGCCGAACGCATCCGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGc < 1:156180/234‑1 (MQ=255) ctagatggctagaCGGCGGCGGGCAAATGGCCGAACGCATCCGCAACCACGACTGGGCCAGCAC‑CCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTcc < 1:365518/236‑1 (MQ=255) cggGCAAATGGCCGAACGCATCCGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAg > 1:682977/1‑236 (MQ=255) cAAATGGCCGAACGCATCCGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAg < 2:602396/232‑1 (MQ=255) aCGCATCCGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATca < 1:874508/236‑1 (MQ=255) cGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCAt < 1:806585/236‑1 (MQ=255) gCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGtt < 1:679062/236‑1 (MQ=255) tCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTg < 1:835733/236‑1 (MQ=255) cccTGGGCCCGCGGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTg < 2:236347/152‑1 (MQ=255) ccGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTa > 1:535277/1‑236 (MQ=255) ggAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCg < 1:498856/202‑1 (MQ=255) ggAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCg > 2:498853/1‑202 (MQ=255) gAACATTGGCCCGACGCCCTGAAAACCACGCTGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACg > 2:200629/1‑163 (MQ=255) aaCATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGa > 1:569367/1‑235 (MQ=255) cccTGAAAACCCCGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCg < 2:535274/201‑1 (MQ=255) cccTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTgg < 2:582988/152‑1 (MQ=255) cccTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTgg > 1:582991/1‑152 (MQ=255) tGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATc < 1:715455/236‑1 (MQ=255) aaaCCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGc > 2:211338/1‑147 (MQ=255) aaaCCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGc < 1:211340/147‑1 (MQ=255) aaaCCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATc < 2:682974/233‑1 (MQ=255) cACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCCGGCCGTGCTGTGGGGCCCGGACTTGATCCCCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCa < 1:185659/236‑1 (MQ=255) cACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATTCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCg < 1:20488/234‑1 (MQ=255) gctGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGaa < 2:755069/186‑1 (MQ=255) tgCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCCGCATGGCGGCCCGCGCGCTGGCCGGt > 2:117427/1‑180 (MQ=255) ccTGGCCTCGCTCTTTCCGCAGGCAGTGCTGTGGAGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAATCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGACGGACCGTGCTTTGGCCGGt < 2:492360/178‑1 (MQ=255) cTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCt < 1:903177/136‑1 (MQ=255) cTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCt > 2:903174/1‑136 (MQ=255) ggCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCACTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAg > 1:67289/1‑131 (MQ=255) ggCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCACTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAg < 2:67289/131‑1 (MQ=255) ggCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCACTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAg < 2:462117/131‑1 (MQ=255) ggCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCACTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAg > 1:462120/1‑131 (MQ=255) ccTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCtgatg > 2:434899/1‑206 (MQ=255) ccTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGGTTGGAGCGGGc > 1:188562/1‑235 (MQ=255) tCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAg < 1:179996/127‑1 (MQ=255) tCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAg > 2:179994/1‑127 (MQ=255) tCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGc > 2:588361/1‑233 (MQ=255) tCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTa > 1:812465/1‑236 (MQ=255) gcgcTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGt < 1:56013/157‑1 (MQ=255) gcTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCa < 1:71277/210‑1 (MQ=255) gcTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTc < 1:861792/236‑1 (MQ=255) tCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCAc < 2:812462/234‑1 (MQ=255) cGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCGTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCg < 2:39755/159‑1 (MQ=255) tgGGGCCCGGACTTGATCCCCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGc < 1:312325/205‑1 (MQ=255) ccTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGCCATGATGGCgaga < 1:588364/236‑1 (MQ=255) aaCGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGCCATGATGGCgc > 1:227380/1‑226 (MQ=255) tGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGCCATGATGGCGAGATTCTGGGCATg > 1:522183/1‑235 (MQ=255) tCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTgg > 2:572604/1‑36 (MQ=255) tCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTggc > 1:181611/1‑165 (MQ=255) tCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGCCATGATGGc > 1:364901/1‑215 (MQ=255) tCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGCCATGATGGCGAGATTCTGGGCATGCTCGa > 1:256165/1‑235 (MQ=255) tCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTCGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGcc > 1:260817/1‑173 (MQ=255) aCGCCGATTCGCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTAtt < 2:236819/175‑1 (MQ=255) tctcGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGCCATGATGGCGAGATTCTGGGCATGCTCGACACGGTCAcc > 1:799381/1‑235 (MQ=255) cGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGc > 2:56894/1‑189 (MQ=255) cGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGc < 1:56894/189‑1 (MQ=255) cAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTa > 1:130996/1‑171 (MQ=255) gCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGttt < 2:608059/141‑1 (MQ=255) gCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGttt > 1:608062/1‑141 (MQ=255) | GACCGGCAAAGCACATGGCTAGATGGCTAGACGGCGGCGGGCAAATGGCCGAACGCATCCGCAACCACGACTGGGCCAGCACTCCCCTGGGCCCGCTGGAACATTGGCCCGACGCCCTGAAAACCACGATGTCTCTGTGCCTGGCCTCGCGCTTTCCGCAGGCCGTGCTGTGGGGCCCGGACTTGATCACCCTGTACAACGATGCGTTCACGCCGATTCTCGGTCGCAAGCCCCTGGCCTTGGGCATCCCCTTCCGCGACGTGTGGCACGAAGCCTGGGATGAAATCAGCAGCATGGCGGACCGTGCGTTGGCCGGTGAAGCGGTGTACATCGAAGACTTCCCGCTGATGATCGACCGCAACGGAGGTTTGGAGCGGGCCTATTTCACCTTCTGCTACAGCCCGATTCGCGGCCATGATGGCGAGATTCTGGGCATGCTCGACACGGTCACC > AE015451/4145904‑4146355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |