| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 206,311 | G→C | 7.3% | V3939V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 206,311 | 0 | G | C | 7.3% | 201.5 / 4.5 | 67 | V3939V (GTG→GTC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base G (32/30); new base C (2/3); total (34/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
GCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGT > AE015451/206087‑206538 | gCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAggcgg > 1:282563/1‑236 (MQ=255) ccAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGgcggcg < 1:356698/236‑1 (MQ=255) cAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTAGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAggcggc < 2:872655/234‑1 (MQ=255) aGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCAC‑‑‑‑‑‑‑‑‑GTCGGTCACCGAAGGCGGCga > 1:8764/1‑235 (MQ=255) ccATACGCCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTAGGCATCGCGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGCACCTGCAACTGGGCGGCAACGCTTCGGTTCAACTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCg < 1:347682/193‑1 (MQ=255) tGCGCAAGGCGATGACGCCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCAc < 1:939381/207‑1 (MQ=255) tGCGCAAGGCGATGACATCTACAACGACGCTGGCCAGATGAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGgcggcg > 2:520102/1‑188 (MQ=255) aaGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACgg > 2:317620/1‑220 (MQ=255) aaGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGAGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGCCCGCAGGCGGCGAGAt > 2:90821/1‑187 (MQ=255) cGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCCGACcaaaa > 2:402509/1‑201 (MQ=255) tCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAggcggc < 2:899607/170‑1 (MQ=255) gacgCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTGGTGTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAAcc < 2:858305/226‑1 (MQ=17) acgCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGc < 2:673557/204‑1 (MQ=255) cTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCg < 2:621683/203‑1 (MQ=255) cTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCg > 1:621686/1‑203 (MQ=255) tGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTg > 1:791534/1‑235 (MQ=255) accAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCCCCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATc < 2:178953/166‑1 (MQ=255) gggCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGGCACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAAcc > 1:356399/1‑235 (MQ=255) gggCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCa > 1:197993/1‑205 (MQ=255) ggCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGc < 2:412040/184‑1 (MQ=255) tCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACca > 2:701442/1‑160 (MQ=255) tCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCt > 1:784490/1‑173 (MQ=255) cctgctgTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATcacc > 2:7912/2‑181 (MQ=255) ctgTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAAcc > 2:760632/1‑183 (MQ=255) ctgTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAAcc < 1:760635/183‑1 (MQ=255) ctgTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAg < 1:13273/208‑1 (MQ=255) ctgTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGc > 1:333478/1‑234 (MQ=255) tgtgGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCAcctgg > 1:92125/1‑229 (MQ=255) aTGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCCCg > 2:467022/1‑197 (MQ=255) gccGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTa < 1:87448/233‑1 (MQ=38) aCGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAAAAAAGACGGTCTGCCGATCAACAAcc < 1:396126/171‑1 (MQ=255) cGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGGGCATTGACCt > 2:13273/1‑185 (MQ=255) cGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACA‑‑GCATTGACCTTCACGCTGAGCGACGGCaaaa > 2:485720/1‑204 (MQ=255) cGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGGGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAg > 2:809750/1‑195 (MQ=39) ggTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCAc < 1:584664/122‑1 (MQ=255) ggcGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTAc < 1:58465/230‑1 (MQ=37) gTCCCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACcaa < 1:496168/142‑1 (MQ=255) tgcgaCCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGCTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGc < 2:523683/151‑1 (MQ=18) gCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTg > 2:337771/1‑152 (MQ=38) gCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTggg > 1:780392/1‑235 (MQ=37) gaCCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGcc < 2:307745/215‑1 (MQ=11) cACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGAc > 1:518253/1‑145 (MQ=38) cACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCg > 1:759943/1‑217 (MQ=34) cACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGt > 1:382881/1‑226 (MQ=35) cACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTa > 1:485367/1‑236 (MQ=38) cACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGAccc > 1:91870/1‑178 (MQ=11) gccTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCGCCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGgcggcg < 2:300344/108‑1 (MQ=25) ccTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGt < 1:247464/233‑1 (MQ=35) aCTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGACTGccc > 1:324472/1‑236 (MQ=40) tGGGCGGCAACGCTTCGGTCCAAGTCACCGACACCACCGACGAAGTCGTGGCCAAGCTGACCGCGCCCCC‑‑‑‑‑‑‑‑‑GTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGACTGcccc < 1:117796/235‑1 (MQ=255) ggcAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTc < 1:598833/156‑1 (MQ=14) ggcAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGc < 1:383948/146‑1 (MQ=37) gcAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGCCGGc > 2:177471/1‑170 (MQ=9) gccGACACCACCGACGAAGTGGTGGCCACGCTGACCGCCACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGc < 2:92125/149‑1 (MQ=12) aCCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCAcc < 1:919511/165‑1 (MQ=33) gACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGtca < 2:53148/157‑1 (MQ=33) gacgaAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTggg > 1:526696/1‑176 (MQ=35) gacgaAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCg < 2:9832/187‑1 (MQ=37) acgaAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTg > 2:572183/1‑228 (MQ=39) gaAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAAc < 1:903087/162‑1 (MQ=33) gtggtgGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGAt < 1:141276/236‑1 (MQ=25) tggCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCCTCACCGTGCCGGCCAACGGTACCGTGGTTACTGCTACCGTGACTGCCCCGGACCACGTCTACGTc > 1:73067/1‑203 (MQ=255) gCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAccc > 2:91144/1‑132 (MQ=21) cTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTc < 2:559779/221‑1 (MQ=25) gACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCt < 1:103097/41‑1 (MQ=38) gccccc‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGAc < 2:204373/163‑1 (MQ=38) cc‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGt > 1:695591/1‑236 (MQ=39) | GCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCC‑‑‑‑‑‑‑‑‑GTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGTACCGTGGGTACTGCTACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGT > AE015451/206087‑206538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |