| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 395456 = | 70 (0.810) | 5 (0.060) | 5/340 | NT | 7.5% | coding (838/1200 nt) | fdhA | formaldehyde dehydrogenase |
| ? | AE015451 | 395503 = | 57 (0.690) | coding (885/1200 nt) | fdhA | formaldehyde dehydrogenase | |||||
AATGTTGATGCGGTCCCACATGATCGCCTGCATCAGCTGGCGGTTGTATTTCATGGTCGGGGTCTGGCCGGTGTGGAAGCTGTGCGATTTCGCCCAGCCCAGGCCGAAGCGGATGCTCAGCGCGCCGATCTTGGCAGCGGCATCCACCGCGCCCGGGTCTTCGGTCACGTACAGGCCCGGGATACCGATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/395695‑395456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggccggCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCATGAAATACAACCGCCAGCTGATGCAGGCGATCATGTGGGACCGCATCAACATTGCTGAAGTGGTAGGTGTGCAGGTGATCAACCTGGATCAGGC > AE015451/395503‑395736 AATGTTGATGCGGTCCCACATGATCGCCTGCATCAGCTGGCGGTTGTATTTCATGGTCGGGGTCTGGCCGGTGTGGAAGCTGTGCGATTTCGCCCAGCCCAGGCCGAAGCGGATGCTCAGCGCGCCGATCTTGGCAGCGGCATCCACCGCGCCCGGGTCTTCGGTCACGTACAGGCCCGGGATACCGATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTG > 1:1130192/1‑235AATGTTGATGCGGTCCCACATGATCGCCTGCATCAGCTGGCGGTTGTATTTCATGGTCGGGGTCTGGCCGGTGTGGAAGCTGTGCGATTTCGCCCAGCCCAGGCCGAAGCGGATGCTCAGCGCGCCGATCTTGGCAGCGGCATCCACCGCGCCCGGGTCTTCGGTCACGTACAGGCCCGGGATACCGATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGG > 1:1522037/1‑233 CCTGCATCAGCTGGCGGTTGTATTTCATGGTCGGGGTCTGGCCGGTGTGGAAGCTGTGCGATTTCGCCCAGCCCAGGCCGAAGCGGATGCTCAGCGCGCCGATCTTGGCAGCGGCATCCACCGCGCCCGGGTCTTCGGTCACGTACAGGCCCGGGATACCGATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGGCCGG > 1:700457/1‑214 CGGGGTCTGGCCGGTGTGGAAGCTGTGCGATTTCGCCCAGCCCAGGCCGAAGCGGATGCTCAGCGCGCCGATCTTGGCAGCGGCATCCACCGCGCCCGGGTCTTCGGTCACGTACAGGCCCGGGATACCGATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGG < 2:1522034/179‑1 GAAGCTGAGCGATGTCGCCCAGCCCAGGCCGAAGCGGATGCTCAGCGCGCCGATCTTGGCAGCGGCATCCAGCGCGCCCGGGTCTTCGGTCACGTACAGGCCCGGGATACCGATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCCCGGTGGCC < 2:245152/163‑1 GCCGATCTTGGCAGCGGCATCCACCGCGCCCGGGTCTTCGGTCACGTACAGGCCCGGGATACCGATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGGCC < 2:1237871/115‑1 ATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACCGCTTCCACACCGGCCAGACCCCGAC > 2:104177/1‑191 GGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACC < 1:1385617/169‑1 GGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACC > 2:1385614/1‑169 GGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGG > 1:153580/1‑41 GGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGG < 2:153579/41‑1 GTTCAGCACGGAGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGA > 2:180548/1‑95 CAGCACGGTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCATGAAATACAACCGCCAGCTGATGCAGGCGATCATGTGGGACCGCATCAACATTGCTGAAGTGGTAGGTGTGCAGGTGA > 2:1490120/1‑233 GTGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCATGAAATACAACCGCCAGCTGATGCAGGCGATCATGTGGGACCGCATCAACATTGCTGAAGTGGTAGGT > 2:374534/1‑216 TGGCCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGGGGGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCATGAAATACAACCGCCAGCTGATGCAGGCGATCATGTGGGACCGCATC < 2:1259265/194‑1 CCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCATGAAATACAACCGCCAGCTGATGCAGGCGATCATGTGGGACCGCATCAACATTGCTGAAGTGGTAGGGGTGCAGGTGATCAACCTGGCTCAG > 1:307304/1‑236 CCGGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCATGA > 2:152859/1‑147 GGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCATGAAATACAACCGCCAGCTGATGCAGGCGATCATGTGGGACCGCATCAACATTGCTGAAGTGGTAGGTGTGCAGGTGATCAACCTGGATCAGGC > 1:1251519/1‑236 GGCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCAT > 2:188396/1‑143 AATGTTGATGCGGTCCCACATGATCGCCTGCATCAGCTGGCGGTTGTATTTCATGGTCGGGGTCTGGCCGGTGTGGAAGCTGTGCGATTTCGCCCAGCCCAGGCCGAAGCGGATGCTCAGCGCGCCGATCTTGGCAGCGGCATCCACCGCGCCCGGGTCTTCGGTCACGTACAGGCCCGGGATACCGATGTTGCCGGCCACGCGGGTCACTTGCATCAGCGAGTTCAGCACGGTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/395695‑395456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggccggCAACATCGGTATCCCGGGCCTGTACGTGACCGAAGACCCGGGCGCGGTGGATGCCGCTGCCAAGATCGGCGCGCTGAGCATCCGCTTCGGCCTGGGCTGGGCGAAATCGCACAGCTTCCACACCGGCCAGACCCCGACCATGAAATACAACCGCCAGCTGATGCAGGCGATCATGTGGGACCGCATCAACATTGCTGAAGTGGTAGGTGTGCAGGTGATCAACCTGGATCAGGC > AE015451/395503‑395736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |