New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 473931	88 (1.020)	10 (0.120)	7/338	NT	10.2%	coding (1054/1983 nt)	dnaG	DNA primase
	?	AE015451	= 474014	93 (1.140)					coding (971/1983 nt)	dnaG	DNA primase

CGACCTGCTGCGGGTCGAGGCCGGTGATTTCCTTCAGGCGGTTGCGCATCAGCTGACGCAGGTTGGCGCCGGGGATCTTTTCGATCAACGGTGCGGCCAAGGTCGCCATATGCGCCTTGCCTTCCAGCGAGCGCGGGTCGGCTTCTACGCCAAGTTGCTCGAAGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGGCGCGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/473697‑473931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcacTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTTCATGGCCCGTATCAACCAGCATTCCCAACCGCTGGCCGACTACTTCTTCGAGCAACTTGGCGTAGAAGCCGACCCGCGCTCGCTGGAAGGCAAGGCGCATATGGCGACCTTGGCCGCAC  <  AE015451/474014‑473787                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGACCTGCTGCGGGTCGAGGCCGGTGATTTCCTTCAGGCGGTTGCGCATCAGCTGACGCAGGTTGGCGCCGGGGATCTTTTCGATCAACGGTGCGGCCAAGGTCGCCATATGCGCCTTGCCTTCCAGCGAGCGCGGGTCGGCTTCTACGCCAAGTTGCTCGAAGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGGCGC                                                                                                                                                                                                                                          <  2:908996/231‑1           CGGGTCGAGGCCGGTGATTTCCTTCAGGCGGTTGCGCATCAGCTGACGCAGGTTGGCGCCGGGGATCTTTTCGATCAACGGTGCGGCCAAGGTCGCCATATGCGCCTTGCCTTCCAGCGAGCGCGGGTCGGCTTCTACGCCAAGTTGCTCGAAGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGG                                                                                                                                                                                                                                             >  1:44179/1‑218            GGGTCGAGGCCGGTGATTTCCTTCAGGCGGTTGCGCATCAGCTGACGCAGGTTGGCGCCGGGGATCTTTTCGATCAACGGTGCGGCCAAGGTCGCCATATGCGCCTTGCCTTCCAGCGAGCGCGGGTCGGCTTCTACGCCAAGTTGCTCGAAGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGGCG                                                                                                                                                                                                                                           <  1:1373616/219‑1                                                                        GGGTTCTTTTCGATCAACGGTGCGGCCAAGGTCGCCATATGCGCCTTGCCTTCCAGCGAGCGCGGGTCGGCTTCTACGCCAAGTTGCTCGATGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCG                                                                                                                                                                                                                                              <  2:1097948/156‑1                                                                                                                        CCTTCCAGCGAGCGCGGGTCGGCTTCTACGCCAAGTTGCTCGAAGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGGCGCGCACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGA                                                                                                                                                                   <  1:184737/183‑1                                                                                                                                     GCGGGTCGGCTTCTACGCCAAGTTGCTCGAAGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGCAGGCGTCGGTACCTTCTGCGCGCACTGGAATCGACA                                                                                                                                                                                                                           >  1:167332/1‑114                                                                                                                                     GCGGGTCGGCTTCTACGCCAAGTTGCTCGAAGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGGCGCGCACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGACGGCc                                                                                                                                                                    >  2:184736/1‑168                                                                                                                                                                                    GGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGGCGCGCACGGGAATCGACATTGTCGAACCTGCcg                                                                                                                                                                                                            >  1:7197/1‑80                                                                                                                                                                                        GGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGGCGCGCACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTTCATGGCCCGTACCAACCAGCATTCCCAA                                                                                             >  2:896579/1‑189                                                                                                                                                                                                       TACGGGCCATGAAGGCGTCGGTACCTTCGGCGCGCACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCT                                                                                                                                                                                     >  2:1477040/1‑86                                                                                                                                                                                                                           GTACCTTCGGCGCGCACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTTCATGGCCCGTATCAACCAGCATTCCCAACCGCTGGCCGACTACTTCTTCGAGCCACTTGGCGTAGAAGCCGACCCGCGCCCGCTGGAAGGCAAGCCGCA                      >  1:396132/1‑225                                                                                                                                                                                                                           GTACCTTCGGCGCGCACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTTCATGGCCCGTATCAACCAGCATTCCCAACCGCTGGCCGACTACTTCTTCGAGCAACTTGGCGTAGCAGCCGACCCGCGCGCGCTG                                    >  2:1461009/1‑211                                                                                                                                                                                                                           GTACCTTCGGCGCGCACTGGAAGCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTGCATGGCCCG                                                                                                                >  2:1145214/1‑135                                                                                                                                                                                                                             ACCTTCGGCGCGCACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTTCATGGCCCGTATCAACCAGCATTCCCAACCGCTGGCCGACTACTTCTTCGAGCAACTTGGCGTAGAAGCCGAC                                                >  2:973380/1‑197                                                                                                                                                                                                                                         CACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTTCATGGCCCGTATCAACCAGCATTCCCAACCGCTGGCCGACTACTTCTTCGAGCAACTTGGCGTAGAAGCCGACCCGCGCTCGCTGGAAGGCAAGGCGCATATGGCGACCTTGGCCGCAC  <  2:1289370/231‑1                                                                                                                                                                                                                                         CACTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTTCATGGCCCGTATCAACCAGCATTCCCAACCGCTGGCCGACTACTTCTTCGAGCAACTTGGCGTAGAAGCCGACCCGCGCTCGCTGGAAGGCAAGGCGCATATGGC                <  2:632963/217‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGACCTGCTGCGGGTCGAGGCCGGTGATTTCCTTCAGGCGGTTGCGCATCAGCTGACGCAGGTTGGCGCCGGGGATCTTTTCGATCAACGGTGCGGCCAAGGTCGCCATATGCGCCTTGCCTTCCAGCGAGCGCGGGTCGGCTTCTACGCCAAGTTGCTCGAAGAAGTAGTCGGCCAGCGGTTGGGAATGCTGGTTGATACGGGCCATGAAGGCGTCGGTACCTTCGGCGCGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/473697‑473931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcacTGGAATCGACATTGTCGAACCTGCAGGACGGCCGTCGCGCGCGCTTCCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCCTGGTGCGCGCCGAAGGTACCGACGCCTTCATGGCCCGTATCAACCAGCATTCCCAACCGCTGGCCGACTACTTCTTCGAGCAACTTGGCGTAGAAGCCGACCCGCGCTCGCTGGAAGGCAAGGCGCATATGGCGACCTTGGCCGCAC  <  AE015451/474014‑473787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.