New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 66559861 (0.710)6 (0.070) 5/340 NT 8.7% coding (2464/4902 nt) yfhM lipoprotein of unknown function
?AE015451 = 665607 68 (0.830)coding (2473/4902 nt) yfhM lipoprotein of unknown function

GACAAACCCTCCTACACCGATGGCGCTACCGCCAAGGTCACCGTCACTCCGCCCGCTGCGGGCAGCGGCTACCTGATGATCGAGTCCAGCGATGGCCCGCTGTGGTGGCAGGAGATCGATGTGCCCGCCGAGGGCAAGACCTTTGACGTGCAACTGGACAAGGCCTGGGCCCGTCACGACCTGTACATCAGCGCGTTGGTTATCCGCCCTGGTGAGCGCAAGGCCAATGCCACGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/665361‑665598
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcccaCGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑GGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGGGCGGAGTGACGGTGACCTTGGCGGTAGCGCCATCGGTGTA  <  AE015451/665607‑665373
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
GACAAACCCTCCTACACCGATGGCGCTACCGCCAAGGTCACCGTCACTCCGCCCGCTGCGGGCAGCGGCTACCTGATGATCGAGTCCAGCGATGGCCCGCTGTGGTGGCAGGAGATCGATGTGCCCGCCGAGGGCAAGACCTTTGACGTGCAACTGGACAAGGCCTGGGCCCGTCACGACCTGTACATCAGCGCGTTGGTTATCCGCCCTGGTGAGCGCAAGGCCAATGCCACGC                                                                                                                                                                                                                                                 <  1:882375/235‑1
                                      CACCGTCACTCCGCCCGCTGCGGGCAGCGGCTACCTGATGATCGAGTCCAGCGATGGCCCGCTGTGGTGGCAGGAGATCGATGTGCCCGCCGAGGGCAAGACCTTTGACGTGCAACTGGACAAGGCCTGGGCCCGTCACGACCTGTACATCAGCGCGTTGGTTATCCGCCCTGGTGAGCGCAAGGCCAATGCCAC                                                                                                                                                                                                                                                   <  1:1427621/195‑1
                                                                                        GCGAGGGCCCGCTGTGGTGGCAGGAGATCGATGTGCCCGCCGAGGGCAAGACCTTTGACGTGCAACTGGACAAGGCCTGGGCCCGTCACGACCTGTACATCAGCGCGTTGGTTATCCGCCCTGGTGAGCGCAAGGCCAATGCCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑G                                                                                                                                                                                                  <  2:521307/193‑1
                                                                                                                                                                                                 CGTTGGTTATCCGCCCTGGTGAGCGCAAGGCCAATGCCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑GGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTG                                                                                                                            >  1:1515975/1‑158
                                                                                                                                                                                                    TGGTTATCCGCCCTGGTGAGCGCAAGGCCAATGCCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑GGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCG                                                >  1:1090393/1‑231
                                                                                                                                                                                                                   GTGAGCGCAAGGCCAATGCCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGCGGGATAACCAACGCGCTGATGTACAG                                                                                                                                                                          >  2:405239/1‑95
                                                                                                                                                                                                                   GTGAGCGCAAGGCCAATGCCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑GGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCG                                                                                                                   >  2:355726/1‑149
                                                                                                                                                                                                                           AAGGCCAATGCCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑GGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCA                                                                                                               >  1:476550/1‑145
                                                                                                                                                                                                                                aAATGCCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCACTCCCCAGGGC‑GGATCACCAACGGGCTGATTTACAGGTCGTCACGGG                                                                                                                                                               >  2:335971/2‑92
                                                                                                                                                                                                                                        CGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑GGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGC                                            <  2:1051881/199‑1
                                                                                                                                                                                                                                             ACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑GGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGGGCGGAGTGACGGTGACCTTGGCGGTAGCGCCATCGGTGTA  >  1:1492310/1‑236
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
GACAAACCCTCCTACACCGATGGCGCTACCGCCAAGGTCACCGTCACTCCGCCCGCTGCGGGCAGCGGCTACCTGATGATCGAGTCCAGCGATGGCCCGCTGTGGTGGCAGGAGATCGATGTGCCCGCCGAGGGCAAGACCTTTGACGTGCAACTGGACAAGGCCTGGGCCCGTCACGACCTGTACATCAGCGCGTTGGTTATCCGCCCTGGTGAGCGCAAGGCCAATGCCACGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/665361‑665598
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcccaCGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGC‑GGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGGGCGGAGTGACGGTGACCTTGGCGGTAGCGCCATCGGTGTA  <  AE015451/665607‑665373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.