New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	665680 =	90 (1.050)	4 (0.050)	4/336	NT	5.3%	coding (2546/4902 nt)	yfhM	lipoprotein of unknown function
	?	AE015451	665839 =	58 (0.710)					coding (2705/4902 nt)	yfhM	lipoprotein of unknown function

GCCTTGGCCGGCCTCGATCAACTGGCCGTAGATGTCCAGTTGATCGGCACCATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGTCCACCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/665897‑665680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgggcgcaAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAACACTACGGTAACCATAGTCGCCCAGCAGAGCCTGCCGGTGACGCTGGACGACAAGGGTGAGGGCCAGGCTACGGTCGACATCCCCGACTTCAACGGCGAATTGCGGCTGATG  >  AE015451/665839‑666071                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCTTGGCCGGCCTCGATCAACTGGCCGTAGATGTCCAGTTGATCGGCACCATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGGCCACCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGATGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCG                                                                                                                                                                                                                                             >  1:133545/1‑216       GCCGGCCTCGATCAACTGGCCGTAGATGTCCAGTTGAACGGCACCATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGTCCCCCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTC                                                                                                                                                                                                                                                  <  1:378913/205‑1               CGATCAACTGGCCGTAGATGTCCAGTTGATCGGCACCATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGTCCACCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGTTGGCGGCCTTTACCGTCACTGTCAACGGCTGTTTCGGGCGC                                                                                                                                                                                                                                            >  1:1210117/1‑203                                                                                                                                                                CACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCG                                                                                                                                                                                                                                                 >  1:1073605/1‑53                                                                                                                                                                 ACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCG                                                                                                                                                    <  1:889740/145‑1                                                                                                                                                                 ACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCG                                                                                                                                                    >  2:889738/1‑145                                                                                                                                                                                    CGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCC                                                                                                                                                                                     <  1:698836/93‑1                                                                                                                                                                                    CGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCC                                                                                                                                                                                     >  2:698834/1‑93                                                                                                                                                                                                                 TTCGGGCGCAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAACACTACGGTAACCATAGTCGCCCAGCAGAGCCTGCCGGTGACGCTGGACGACAAGGGTGAGGGCCAGGCTACGGTCGACATC                                <  2:789195/213‑1                                                                                                                                                                                                                         CAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAACACTACGGTAACCATAGTCGCCCAGCAGAGCCTGCCGGTGACGCTGGACGACAAGGGTGAGGGCCAGGCTACGGTCGACATCCCCGACTTCAACGGCGAATTGCGGCTGATG  <  1:973544/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCTTGGCCGGCCTCGATCAACTGGCCGTAGATGTCCAGTTGATCGGCACCATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGTCCACCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/665897‑665680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgggcgcaAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAACACTACGGTAACCATAGTCGCCCAGCAGAGCCTGCCGGTGACGCTGGACGACAAGGGTGAGGGCCAGGCTACGGTCGACATCCCCGACTTCAACGGCGAATTGCGGCTGATG  >  AE015451/665839‑666071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.