| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 764214 = | 86 (1.000) | 10 (0.120) | 8/340 | NT | 11.3% | coding (307/822 nt) | PP_0656 | putative Amino acid ABC transporter, permease protein |
| ? | AE015451 | 764244 = | 75 (0.910) | coding (277/822 nt) | PP_0656 | putative Amino acid ABC transporter, permease protein | |||||
TCGCACCCGGTTACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/764455‑764214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcggCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCCGGCG > AE015451/764244‑764473 TCGCCCCCGGTTACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA < 1:165598/236‑1TCGCACCCGGTTACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA < 1:341861/236‑1TCGCACCCGGTTACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA < 1:962285/236‑1 ACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGCTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGC < 2:1334275/226‑1 TTTGTCGCCTTCTTCCCCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA < 2:196070/193‑1 TCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGC > 1:1016390/1‑191 GCCTTCTTCCTCAGCTTTGACCTGAAGTGCGCCAGCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA < 1:266073/187‑1 ATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAG < 1:146439/200‑1 ATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAG > 2:146438/1‑200 AGTTTCCCAACTTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCAC < 2:1260676/166‑1 TTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGC < 2:1491650/158‑1 CCACCCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGA < 1:674300/175‑1 CCAACCGGGCCGGTTCCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCC < 2:196822/151‑1 CAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGC > 1:1120047/1‑154 CAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGC < 2:1120044/154‑1 CAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGC < 1:17752/149‑1 ACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTTCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA < 1:400859/79‑1 CTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCAC < 2:23908/95‑1 gggGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCC < 2:730093/230‑1 AGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCC < 2:818044/233‑1 GCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCCGGCG > 1:252683/1‑236 GCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCCG > 2:656961/1‑233 GCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACA > 2:1121918/1‑177 GCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGG < 2:993583/208‑1 TCGCACCCGGTTACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/764455‑764214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcggCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCCGGCG > AE015451/764244‑764473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |