| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 1296899 | NA (NA) | 6 (0.070) | 5/342 | NT | NA | coding (87/1329 nt) | PP_1133 | transposase |
| ? | AE015451 | = 1296914 | NA (NA) | coding (102/1329 nt) | PP_1133 | transposase | |||||
TGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1296661‑1296899‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcgtgCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCA < AE015451/1296914‑1296687 TGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTTTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCAT > 2:1439559/1‑233TGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTC > 1:1109352/1‑236TGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTC > 1:102974/1‑236TGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTC > 1:754894/1‑236TGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATT > 1:1265353/1‑234 GTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCG > 1:1121546/1‑236 GCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGT > 1:1094086/1‑223 CGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATT > 2:670599/1‑218 TATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGAT‑‑A‑AAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTC < 1:207707/198‑1 CTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCG < 1:267617/183‑1 CAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCAT > 1:893738/1‑169 GAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCG < 1:357398/139‑1 GAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCG > 2:357396/1‑139 AACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑GATCCTGCGAGGCTTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGGCGTCCATCCCGATTGCGCGGCGATCGATGCCGGTGGTCGCGAGCATTgc > 2:166500/1‑135 ACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATT > 2:1441398/1‑134 GCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGT > 1:738051/1‑130 TGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGACTGCGCGGCGATCGATGTCGGTGGTCGCGAGCAT > 2:113836/1‑118 GTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGC < 1:755196/176‑1 AGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCG > 2:539911/1‑95 AGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATT > 2:1485415/1‑92 AGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGACAGCATTTCG > 2:1198136/1‑95 GATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGT > 2:996286/1‑94 CATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGACAGCATTTCGTa > 2:120378/1‑90 AAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATTAATC > 1:459464/1‑179 CCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGCC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGATTGGAAGG > 2:1068390/1‑139 CATCCCGATTGCGCGGCGATCGATCTCGGTGGTCGAGAGCATTT > 2:115486/1‑44 GCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACAGACATCGATCGCCGCGCAATCGGGATGGAAGACGGTAAAGCGTTGCTTGGCAGGCTTGCGAGCC > 2:1428892/1‑136 GATGTCGGTGGTCGAGAGCATT > 2:319294/1‑22 TCGAGAGCATTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATGCTCGCAG > 2:970507/1‑133 TCGAGAGCATTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGC > 1:1500060/1‑113 GAGCATTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACACCGACATCGATCGCCGCGAAATCGGGATGGA > 1:760491/1‑79 gagtgTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGT < 2:118870/159‑1 tgTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGT < 1:464087/159‑1 TTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCA > 1:899287/1‑235 TTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGT > 2:456574/1‑180 TTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCAATCT > 2:478187/1‑167 TCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCA < 2:507169/233‑1 TCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGA < 1:1346807/208‑1 TCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAG > 1:396383/1‑192 CGTGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTC < 1:1359473/160‑1 TGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCG < 2:872758/215‑1 TGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCG > 1:872760/1‑215 TGCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGC < 1:1386854/190‑1 TGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCT‑‑T‑TATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1296661‑1296899‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcgtgCCGGGGATCGACCGCCACGAAATGCTCTCGAC‑‑CACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCA < AE015451/1296914‑1296687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |