New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1433929	90 (1.050)	8 (0.100)	7/338	NT	9.1%	coding (455/1248 nt)	PP_1255	putative cis‑4‑hydroxy‑D‑proline oxidase
	?	AE015451	= 1434010	74 (0.910)					coding (374/1248 nt)	PP_1255	putative cis‑4‑hydroxy‑D‑proline oxidase

TGTGTAACTGCCCGCCATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1433687‑1433929 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctggcAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTGTTCTTCCCGCGCACCGGGCACTTCATC  <  AE015451/1434010‑1433781                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGTGTAACTGCCCGCCATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAG                                                                                                                                                                                                                                                <  1:1379546/235‑1      AACTGCCCGCCATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTG                                                                                                                                                                                                                                          >  1:733405/1‑236      AACTGCCCGCCATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTG                                                                                                                                                                                                                                          >  1:1271431/1‑236      AACTGCCCGCCATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTG                                                                                                                                                                                                                                          >  1:540332/1‑236      AACTGCCCGCCATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGC                                                                                                                                                                                                                                             >  2:1489562/1‑233                CATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGc                                                                                                                                                                                                                                         >  1:434900/1‑226                CATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGC                                                                                                                                                                                                                                             >  2:679423/1‑223                                                                                  CCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCA                                                                                                                                                                                                                                       >  1:307534/1‑163                                                                                  CCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCA                                                                                                                                                                                                                                       <  2:307532/163‑1                                                                                    CGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGC                                                                                                                                                                                                                                        >  2:1101624/1‑160                                                                                                                                 CCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGC                                                                                                                                                                                                                                               <  1:1253262/108‑1                                                                                                                                 CCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGC                                                                                                                                                                                                                                               >  2:1253259/1‑108                                                                                                                                                                                GGCCGACCAGACGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGA                                                                                                                                                                                             <  2:66519/111‑1                                                                                                                                                                                         GAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCG                                                                                                     >  1:242902/1‑190                                                                                                                                                                                         GAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCAACGGCGGTTGGGCT                                                                                                                                                                                                                         >  2:596020/1‑74                                                                                                                                                                                                  CGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGAC                                                                                               >  1:1386199/1‑187                                                                                                                                                                                                    GCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGC                                                                                                                >  2:513944/1‑168                                                                                                                                                                                                             GCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGGTCGTTGCTGGGGTTCGAGAAGCCTGAGTTACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAG                                                                                                                 >  2:391340/1‑158                                                                                                                                                                                                                         GTGTGCGCAACGCCTCCAGCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTGTTCTTC                       >  1:1022268/1‑236                                                                                                                                                                                                                                 AACGCCTCCAGCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTGTTCTTCCCGCGCAC               >  1:525846/1‑236                                                                                                                                                                                                                                          AGCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGGAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCC                                                                                   >  1:1507009/1‑159                                                                                                                                                                                                                                           GCGCCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTGTTCTTCCCGCGCACCGGGCACTT      >  1:862600/1‑235                                                                                                                                                                                                                                              CCTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCTGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTGTTCTTCCCGCGCACCGGGCACTTCAT   <  1:512960/235‑1                                                                                                                                                                                                                                               CTGGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTGTTCTTCCCGCGCACCGGGCACTTCAT   <  1:627066/234‑1                                                                                                                                                                                                                                                 GGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGATAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAA                                                                                                                    >  2:125107/1‑119                                                                                                                                                                                                                                                 GGCAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTGTTCTTCCCGCGCACCGGGCACTTCATC  <  1:123427/233‑1                                                                                                                                                                                                                                                   CAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTG                             >  2:1400874/1‑204                                                                                                                                                                                                                                                   CAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCC                                                 >  2:525326/1‑184                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGTGTAACTGCCCGCCATCGACCTGCGCCTGGACAAAGCGCACCCCGCTGGCCTTGGCCGCTTCGAACAATTCGCACACCACCCGATAAGGGTCGATGAAGTGCCCGGTGCGCGGGAAGAACAGCCCGCCTAACAGTGATGGGCTGAGTTGCGGCGCCGCTTCGCGCACGGTTTCGGCCGACCAGAAGTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1433687‑1433929 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctggcAACGGCTGTTGGGCTCGATCGGGCGCAGCGAGTTGTTTCAAGAGGATGGTTCGTTGCTGGTGTTCGAGAAGCCTGAGTCACGCCAGGCGCTGGAGGCGTTGCGCACACGCATGCAACAGCAGGCGGTGCCGGTGGACTTCTGGTCGGCCGAAACCGTGCGCGAAGCGGCGCCGCAACTCAGCCCATCACTGTTAGGCGGGCTGTTCTTCCCGCGCACCGGGCACTTCATC  <  AE015451/1434010‑1433781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.