New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2965724 =	66 (0.770)	6 (0.070)	6/340	NT	9.4%	coding (903/1758 nt)	PP_2595	putative ABC transporter, permease/ATP‑binding protein
	?	AE015451	2965820 =	53 (0.650)					coding (807/1758 nt)	PP_2595	putative ABC transporter, permease/ATP‑binding protein

GCCTGGAGCGCCAGCGCAGCAGCGGCATGGGCCTGATCATTCGTGCTTCGCTGTCAGCACTGCTCAACAGTTGGGCCGTGCAGGCAACATTTGCCGCGCTGTTGGTGGCCGCCGGCCTGTGGTTCGGCGATCAGGCGGGTGGCCAAGCGCAGGACGCAGTTGCGGTGATCGTGGCACTGGTGCTGGTGTGCCGCTTCATCGACCCGCTGCAGGACGTGGCCAGCCATGTCGAGATCCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2965965‑2965724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgcgcTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTTGCGCCAGCAACCGTGTGCCCCCACCCTCCCCATTGAAGGCCCGCAGCACCGACTGTGCCTGGGCGAACTCCACCATACG  >  AE015451/2965820‑2966047                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCCTGGAGCGCCAGCGCAGCAGCGGCATGGGCCTGATCATTCGTGCTTCGCTGTCAGCACTGCTCAACAGTTGGGCCGTGCAGGCAACATTTGCCGCGCTGTTGGTGGCCGCCGGCCTGTGGTTCGGCGATCAGGCGGGTGGCCAAGCGCAGGACGCAGTTGCGGTGATCGTGGCACTGGTGCTGGTGTGCCGCTTCATCGACCCGCTGCAGGACGTGGCCAGCCATGTCGAGATC                                                                                                                                                                                                                                            >  1:750898/1‑236      GAGCGCCAGCGCAGCAGCGGCATGGGCCTGATCATTCGTGCTTCGCTGTCAGCACTGCTCAACAGTTGGGCCGTGCAGGCAACATTTGCCGCGCTGTTGGTGGCCGCCGGCCTGTGGTTCGGCGATCAGGCGGGTGGCCAAGCGCAGGACGCAGTTGCGGTGATCGTGGCACTGGTGCTGGTGTGCCGCTTCATCGACCCGCTGCAGGACGTGGCCAGCCATGTCGAGATCCTGCG                                                                                                                                                                                                                                       <  1:633603/236‑1                                                                            CCGTGCAGGCAACATTTGCCGCGCTGTTGGTGGCCGCCGGCCTGTGGTTCGGCGATCAGGCGGGTGGCCAAGCGCAGGACGCAGTTGCGGTGATCGTGGCACTGGTGCTGGTGTGCCGCTTCATCGACCCGCTGCAGGACGTGGCCAGCCATGTCGAGATCCTG                                                                                                                                                                                                                                         >  1:1002573/1‑164                                                                                                                                                    CGCAGGACGCAGTTGCGGTGATCGTGGCACTGGTGCTGGTGTGCCGCTTCATCGACCCGCTTCAGGACGTGGCCAGCCATGTCGAGATCCTGCGC                                                                                                                                                                                                                                      >  1:140060/1‑95                                                                                                                                                                             GGCACTGGTGCTGGTGTGCCGCTTCATCGACCCGCTGCAGGACGTGGCCAGCCATGTCGAGATCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTTGCGCCAGCAACCGTG                                                                  >  2:1253932/1‑234                                                                                                                                                                                                  CTTCATCGACCCGCTGCAGGACGTGGCCAGCCATGTCGAGATCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTTGCGCCAG                                                                          <  1:514724/205‑1                                                                                                                                                                                                  CTTCATCGACCCGCTGCAGGACGTGGCCAGCCATGTCGAGATCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTTGCGCCAG                                                                          >  2:514722/1‑205                                                                                                                                                                                                                        GTGGCCAGCCATGTCGAGATCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTTGCGCCAGCAACCGTGTGCCCCCACCCTCCCCATTGAAGGCCCGCAGCACCGACTGTGCC                      <  1:1253935/235‑1                                                                                                                                                                                                                                  ATGTCGAGATCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGG                                                                                                                                                               >  1:1325856/1‑88                                                                                                                                                                                                                                  ATGTCGAGATCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGG                                                                                                                                                               <  2:1325853/88‑1                                                                                                                                                                                                                                            CCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTTGCGCCAGCAACCGTGTGCCCCCACCCTCCCCATTGAAGGCCCGCAGCACCGACTGTGCCTGGGCGAACTCCACCATACG  >  1:893737/1‑235                                                                                                                                                                                                                                                 GCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCATGCTTTGCGCCAGCAACCGTGTGCCTCCACCCTCCCCATTGAAGTCCCGCAGCACCGACTGTGCCTGGGa                 >  1:319804/1‑214                                                                                                                                                                                                                                                 GCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGAGCAGGCCCATGCCGCGGCTGCGCTGGCGCTCCAGGCTTTGCGCCAGCAACCGTGTGCCCCCACCCTCCCCATTGAAGGCCCGCAGCACCGACTGgg                        >  1:287163/1‑206                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCCTGGAGCGCCAGCGCAGCAGCGGCATGGGCCTGATCATTCGTGCTTCGCTGTCAGCACTGCTCAACAGTTGGGCCGTGCAGGCAACATTTGCCGCGCTGTTGGTGGCCGCCGGCCTGTGGTTCGGCGATCAGGCGGGTGGCCAAGCGCAGGACGCAGTTGCGGTGATCGTGGCACTGGTGCTGGTGTGCCGCTTCATCGACCCGCTGCAGGACGTGGCCAGCCATGTCGAGATCCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2965965‑2965724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgcgcTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTTGCGCCAGCAACCGTGTGCCCCCACCCTCCCCATTGAAGGCCCGCAGCACCGACTGTGCCTGGGCGAACTCCACCATACG  >  AE015451/2965820‑2966047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.