New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3183508	77 (0.900)	6 (0.070)	5/336	NT	8.4%	coding (1168/1173 nt)	PP_2793	Acyl‑CoA dehydrogenase family protein
	?	AE015451	= 3183570	59 (0.730)					coding (58/768 nt)	PP_2794	Oxidoreductase, short chain dehydrogenase/reductase family

GGTGCTCGACCAGGGCCGGCGCGCCAATGTCGATTCGAGCATGGCCAAGGTGATCAGCGCCGAGGCGCTGTGGCGGGTGGTCGATCGTTGCGTCCAGGTATTGGGTGGACGCGGGGTGACCGGGGACACCGTGGTGGAGCGGATCTTCCGCGACATTCGCCCGTTCCGCATCTATGACGGCCCGAGCGAAGTGCACCGCATGAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTGGAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3183267‑3183508 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaggcccCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGTTCGGCTGCATCAGTGGGCCTCCAGGCGCTGGTCGAGCAGCTTCTTCGCCAGGCTCATGCGGTGCACTTCGCTCGGGCCGTCATAGATGCGGAACGGGCGAATGTCGCGGAAGATCCGCTCCACCACGGTGTCCCCGGTCACCCCGCGTCCACCCAATACCTGGACGCAACGATCGACCACCCG  <  AE015451/3183570‑3183340                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGTGCTCGACCAGGGCCGGCGCGCCAATGTCGATTCGAGCATGGCCAAGGTGATCAGCGCCGAGGCGCTGTGGCGGGTGGTCGATCGTTGCGTCCAGGTATTGGGTGGACGCGGGGTGACCGGGGACACCGTGGTGGAGCGGATCTTCCGCGACATTCGCCCGTTCCGCATCTATGACGGCCCGAGCGAAGTGCACCGCATGAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTG                                                                                                                                                                                                                                                <  1:789602/235‑1                            TGTCGATTCGAGCATGGCCAAGGTGATCAGCGCCGAGGCGCTGTGGCGGGTGGTCGATCGTTGCGTCCAGGTATTGGGTGGACGCGGGGTGACCGGGGACACCGTGGTGGAGCGGATCTTCCGCGACATTCGCCCGTTCCGCATCTATGACGGCCCGAGCGAAGTGCACCGCATGAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTGGAG                                                                                                                                                                                                                                             >  2:732331/1‑211                                GATTCGAGCATGGCCAAGGTGATCAGCGCCGAGGCGCTGTGGCGGGTGGTCGATCGTTGCGTCCAGGTATTGGGTGGACGCGGGGTGACCGGGGACACCGTGGTGGAGCGGATCTTCCGCGACATTCGCCCGTTCCGCATCTATGACGGCCCGAGCGAAGTGCACCGCATGAGCCTGGCGAAGAAGCTGCTCGACCAGCGCC                                                                                                                                                                                                                                                  <  2:1519284/202‑1                                                                                                                                                                                    GCCCGAGCGAAGTGCACCGCATGAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTGGAGGCCCCGGTCACCAGGGCGCGACGCCCGTCGCGGGC                                                                                                                                                                                                          >  2:398201/1‑94                                                                                                                                                                                       CGAGCGAAGTGCACCGCATGAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTGGAGGCCCCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGTTCGGCTGC                                                                                                                                                                                 >  2:1004316/1‑116                                                                                                                                                                                        GAGCGAAGTGCACCGCATGAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTGGAGGCCCCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGTTCGGCTGCATCAGTGGGCCTCCAGGCGCTGGTCGAGCAGCTTCTTCGCCAGGCTCATGCGGTGCACTTCGCTCGGGCC                                                                                                           >  1:784339/1‑185                                                                                                                                                                                                          GAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTGGAGGCCCCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGCTCGGCTGCATCAGTGGGCCTCCAGGCGCTGGTCGAGCAGCTTCTTCGCCAGGCTCATGCGGTGCACCTCGCTCGGGCCGTCct                                                                                                      >  1:691471/1‑170                                                                                                                                                                                                          GAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTGGAGGCCCCGGTCACCAGGGCGCGACG                                                                                                                                                                                                                      >  2:751469/1‑60                                                                                                                                                                                                                    AAGAAGCTGCTCGACCAGCGCCTGGAGGCCCCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGTTCGGCTGCATCAGTGGGCCTCCAGGCGCTGGTCGAGCAGCTTCTTCGCCAGGCTCATGCGGTGCACTTCGCTCGGGCCGTCATAGATGCGGAACGGGCGAATGTCGCGGAAGATCCGCTCCACCACGGTGTCCCCGGTCACCCCGCGTCCACC                                >  1:763451/1‑232                                                                                                                                                                                                                                               GCCCCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGTTCGGCTGCATCAGTGGGCCTCCAGGCGCTGGTCGAGCAGCTTCTTCGCCAGGCTCATGCGGTGCACTTCGCTCGGGCCGTCATAGATGCGGAACGGGCGAATGTCGCGGAAGATCCGCTCCACCACGGTGTCCCCGGTCACCCCGCGTCCACCCAATACCTGGACGCAACGATCGACCACCCG  <  1:567116/235‑1                                                                                                                                                                                                                                               GCCCCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGTTCGGCTGCATCAGTGGGCCTCCAGGCGCTGGTCGAGCAGCTTCTTCGCCAGGCTCATGCGGTGCACTTCGCTCGGGCCGTCATAGATGCGGAACGGGCGAATGTCGCGGAAGATCCGCTCCACCACGGTGTCCCCGGTCACCCCGCGTCCACCCAATA                           >  2:727596/1‑210                                                                                                                                                                                                                                                  CCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGTTCGGCTGCATCAGTGGGCCTCCAGGCGCTGGTCGAGCAGCTTCTTCGCCAGGCTCATGCGGTGCACTTCGCTCGGGCCGTCATAGATGCGGAACGGGCGAATGTCGCGGAAGATCCGCTCCACCACGGTGTCCCCGGTCACCCCGCGTCCACCCAATA                           >  2:615225/1‑207                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGTGCTCGACCAGGGCCGGCGCGCCAATGTCGATTCGAGCATGGCCAAGGTGATCAGCGCCGAGGCGCTGTGGCGGGTGGTCGATCGTTGCGTCCAGGTATTGGGTGGACGCGGGGTGACCGGGGACACCGTGGTGGAGCGGATCTTCCGCGACATTCGCCCGTTCCGCATCTATGACGGCCCGAGCGAAGTGCACCGCATGAGCCTGGCGAAGAAGCTGCTCGACCAGCGCCTGGAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3183267‑3183508 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaggcccCGGTCACCAGGGCGCGACGCCCGTCGAGGGCGAACAGTCGGGCAAGGTTCGGCTGCATCAGTGGGCCTCCAGGCGCTGGTCGAGCAGCTTCTTCGCCAGGCTCATGCGGTGCACTTCGCTCGGGCCGTCATAGATGCGGAACGGGCGAATGTCGCGGAAGATCCGCTCCACCACGGTGTCCCCGGTCACCCCGCGTCCACCCAATACCTGGACGCAACGATCGACCACCCG  <  AE015451/3183570‑3183340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.