| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 3716184 = | 74 (0.860) | 8 (0.100) | 8/328 | NT | 11.1% | coding (105/441 nt) | paaI | hydroxyphenylacetyl‑CoA thioesterase |
| ? | AE015451 | 3716198 = | 60 (0.760) | coding (91/441 nt) | paaI | hydroxyphenylacetyl‑CoA thioesterase | |||||
CCTGCGCGTGCTCGACAACCTGCAGTGCAGCTATGGCGAGAGCCGCTACCGCCCTTCCCTGTTGTTACGCCGCTGTGAAGCCAAAGGAGGCACCCTACATGACTGAAGAGCAACTGGCACAAGCCTGTGCCGACGCCATGTACGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3716386‑3716184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcccgggccggCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGGTAGCGGCTCTCGCCATAGCTGCACTGCAGGTTGTCGAGCACGCGCAGGGTATGGGCAATACCGATGTTCGCCGCCCAGGCCA > AE015451/3716198‑3716420 CCTGCGCGTGCTCGACAACCTGCAGTGCAGCTATGGCGAGAGCCGCTACCGCCCTTCCCTGTTGTTACGCCGCTGTGAAGCCAAAGGAGGCACCCTACATGACTGAAGAGCAACTGGCACAAGCCTGTGCCGACGCCATGTACGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGGCATC < 1:847463/207‑1 CAGCTATGGCGAGAGCCGCTACCGCCCTTCCCTGTTGTTACGCCGCTGTGAAGCCAAAGGAGGCACCCTACATGACTGAAGAGCAACTGGCACAAGCCTGTGCCGACGCCATGTACGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGG < 1:630043/214‑1 CGCTACCGCCCTTCCCTGTTGTTACGCCGCTGTGAAGCCAAAGGAGGCACCCTACATGACTGAAGAGCAACTGGCACAAGCCTGTGCCGACGCCATGTACGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGGCAT > 1:1048606/1‑163 CCGCCCTTCCCTGTTGTTACGCCGCTGTGAAGCCAAAGGAGGCACCCTACATGACTGAAGAGCAACTGGCACAAGCCTGTGCCGACGCCATGTACGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCC < 2:845934/148‑1 ACCCTACATGACTGAAGAGCAACTGGCACAAGCCTGTGCCGACGCCATGTACGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGACGGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGG < 2:791672/142‑1 ACTGGCCCAGGCCTGGGCCGACGCCATGGACGCCCGCGACCCGGCCCCCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGGCAGCCAGCAGGCTGATACCCAGGCCCTGGGT < 2:129375/122‑1 ACGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTG > 2:1048603/1‑141 CGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGG > 2:986210/1‑170 CCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGGTA > 1:1053638/1‑195 TGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGGACATGGCGTCGGCACAGGCTT > 2:1502712/1‑104 CTGGATGCCGGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGGTAGCGGCTCTCGCCATAGCTGCACTGCAGGTTGTCGAGCACGCGCAG < 2:1053635/209‑1 CGGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGGGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGGTAGCGGCTCTCGCCATAGCTGCACTGCAGGTTGTCGAGCACGCGCAGGGTATGGGCAATACCGATGTTCGCCGCCCAGGCCA < 1:99181/236‑1 GGCCCGGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGGTAGCGGCTCTCGCCATAGCTGCACTGCAGGTTGTCGAGCACGCGCAGGGTATGGGCAATACCGATGTTCGCCGCCCAGGC > 2:1206023/1‑233 GGGCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGG < 1:845936/148‑1 GCCGGCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACTTGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGGTAGCGGCTCTCGCCATAGCTGCACTGCAGGTTGTCG < 1:791674/182‑1 GCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGGTAGCGGCTCTCGCCATAGCTGCACTGCAGGTTGTCGAGCACG < 2:1496384/184‑1 CCTGCGCGTGCTCGACAACCTGCAGTGCAGCTATGGCGAGAGCCGCTACCGCCCTTCCCTGTTGTTACGCCGCTGTGAAGCCAAAGGAGGCACCCTACATGACTGAAGAGCAACTGGCACAAGCCTGTGCCGACGCCATGTACGCCCGCGACCCGGCCACCCAGGGCCTGGGTATCAGCCTGCTGGATGCCGGCCCGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3716386‑3716184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcccgggccggCATCCAGCAGGCTGATACCCAGGCCCTGGGTGGCCGGGTCGCGGGCGTACATGGCGTCGGCACAGGCTTGTGCCAGTTGCTCTTCAGTCATGTAGGGTGCCTCCTTTGGCTTCACAGCGGCGTAACAACAGGGAAGGGCGGTAGCGGCTCTCGCCATAGCTGCACTGCAGGTTGTCGAGCACGCGCAGGGTATGGGCAATACCGATGTTCGCCGCCCAGGCCA > AE015451/3716198‑3716420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |