New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3951241 =	83 (0.970)	4 (0.050)	4/338	NT	5.1%	coding (656/666 nt)	PP_3487	conserved exported protein of unknown function
	?	AE015451	3951289 =	70 (0.860)					coding (608/666 nt)	PP_3487	conserved exported protein of unknown function

CTGAAGGCGTTCGCCGCCAAGCAGGGGGTGGATGGGCCGAACTGGCTGTTCCTGACCGGCGACAAGGCCAATGTCGACCTGGTGCTTGGCCGTATAGGGCAGTTCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGTGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3951479‑3951241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctggcGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCT  >  AE015451/3951289‑3951512                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGAAGGCGTTCGCCGCCAAGCAGGGGGTGGATGGGCCGAACTGGCTGTTCCTGACCGGCGACAAGGCCAATGTCGACCTGGTGCTTGGCCGTATAGGGCAGTTCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGTGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCT                                                                                                                                                                                                                                     <  1:53147/236‑1    AAGGCGTTCGCCGCCAAGCAGGGGGTGGATGGGCCGAACTGGCTGTTCCTGACCGGCGACAAGGCCAATGTCGACCTGGTGCTTGGCCGTATAGGGCAGTTCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGTGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTGGC                                                                                                                                                                                                                                  >  1:1209508/1‑236    AAGGCGTTCGCCGCCAAGCAGGGGGTGGATGGGCCGAACTGGCTGTTCCTGACCGGCGACAAGGCCAATGTCGACCTGGTGCTTGGCCGTATAGGGCAGTTCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGTGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTGGC                                                                                                                                                                                                                                  <  1:1401086/236‑1    AAGGCGTTCGCCGCCAAGCAGGGGGTGGATGGGCCGAACTGGCTGTTCCTGACCGGCGACAAGGCCAATGTCGACCTGGTGCTTGGCCGTATAGGGCAGTTCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGTGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTG                                                                                                                                                                                                                                    >  2:1157721/1‑234                                      CGAACTGGCTGTTCCTGACCGGCGACAAGGCCAATGTCGACCTGGTGCTTGGCCGTATAGGGCAGTTCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGTGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTGc                                                                                                                                                                                                                                   >  1:382109/1‑200                                                                                         GCCGTATAGGGCAGTTCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGTGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCA                                                                                                                                                                           <  1:703192/206‑1                                                                                               tgGGGCAGTGCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGGGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTG                                                                                                                                                                                                                                    <  2:426023/141‑1                                                                                                                                                                                                GCCAGCGGCGCTTGCCCAGCGCCTGCAGCTGTTGGACCAGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAAT                                                                                                                                                                             <  2:585690/101‑1                                                                                                                                                                                                     CGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTGGCGGTGCATCCGGGCGAATCTTG                                                                                                                                                                                                             <  1:1328233/64‑1                                                                                                                                                                                                     CGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTGGCGGTGCATCCGGGCGAATCTTG                                                                                                                                                                                                             >  2:1328230/1‑64                                                                                                                                                                                                                                       GCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCT  >  2:519984/1‑233                                                                                                                                                                                                                                       GCCGCTGGAGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGG                           <  1:472784/208‑1                                                                                                                                                                                                                                        CCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCC                                                                >  2:639262/1‑170                                                                                                                                                                                                                                        CCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGGCGACATTGGCCTTGTCGCCGGTCAGGg                                                                                    >  1:246149/1‑149                                                                                                                                                                                                                                           CTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCG                            <  1:1267173/203‑1                                                                                                                                                                                                                                           CTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACT                                                                                                                                       <  2:948619/96‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGAAGGCGTTCGCCGCCAAGCAGGGGGTGGATGGGCCGAACTGGCTGTTCCTGACCGGCGACAAGGCCAATGTCGACCTGGTGCTTGGCCGTATAGGGCAGTTCCTGCCGAGTCCCGAGCAGCATTCGACGCAGCTGATTGCCGGTGATGTTGCAGGTAAACGCTGGAGCAAGATTCGCCCGGATGCACCGCCAGCGGCGATTGCCCAGCGCATGCAGCTGTTGACCCAGCCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3951479‑3951241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctggcGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCT  >  AE015451/3951289‑3951512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.