New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3970610	NA (NA)	6 (0.080)	5/324	NT	NA	coding (529/1536 nt)	PP_3501	transposase
	?	AE015451	= 3970594	NA (NA)					coding (513/1536 nt)	PP_3501	transposase

GGCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3970372‑3970610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGTGACGAAGCG  <  AE015451/3970594‑3970360                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCG                                                                                                                                                                                                                                                 <  1:1175747/235‑1   CCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCG                                                                                                                                                                                                                                                 <  2:845626/233‑1    CGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGC                                                                                                                                                                                                                                                           <  2:1358092/222‑1         CACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCG                                                                                                                                                                                                                                                 >  1:1455076/1‑227                                CCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGGGGCAAATGGGCCTGTCGCCAGTGCGAAACCCTGATCCAGGCCCCG                                                                                                                                                                                                                                                       >  2:107147/1‑198                                     GCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTGCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                                <  2:326584/200‑1                                      CCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC                                                                                                                                                                                                                                             >  1:236304/1‑202                                        GCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCG                                                                                                                                                                                                                                                       <  2:756562/190‑1                                         CCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTAC                                                                                                                                                                                                                                                   <  1:1475813/193‑1                                         CCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTAC                                                                                                                                                                                                                                                   >  2:1475810/1‑193                                                                                  CACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGAT                                                                                                                                                                                           <  1:1443065/208‑1                                                                                         TGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAGGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTG                                                                                                                                                                                                                                          <  2:1086748/154‑1                                                                                               TGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTG                                                                                                                                                                                                                                          <  2:1330750/148‑1                                                                                                        CAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGC                                                                                                                                                                                                                                                           <  1:1359927/122‑1                                                                                                                              ACGGCAGCTAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGCGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCTAACCACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCAC                                                                                                                                                                                                                          <  2:253016/133‑1                                                                                                                                GTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCG                                                                                                                                                                                      <  2:1476243/167‑1                                                                                                                                          AGCTGGATTACACGCCAGGGGTATTCACGGCCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCC                                                                                                                                                                                                      <  1:1504640/141‑1                                                                                                                                            tTGGATTACACGCCAGGGTTATTCACGGTCGAGCATCATGTGGGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTG                                                                                                                                                                                                                                          <  2:77490/102‑1                                                                                                                                                                  TCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCTCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCACGACCGTGAATACCCCTG                                                                                                                                                                      >  1:61119/1‑149                                                                                                                                                                                             AATGGGCCTGCCGTCAGTGCGAAACACTGCTCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGAT                                                                                                                                                                                           <  2:915096/101‑1                                                                                                                                                                                                                                GCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCt                 >  1:205102/1‑235                                                                                                                                                                                                                                GCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTC                  <  2:1029839/235‑1                                                                                                                                                                                                                                 CGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTTTAATCCAGCTTCTC                                                                                                                                                   >  2:28405/1‑105                                                                                                                                                                                                                                 CGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTC                  <  2:1246980/234‑1                                                                                                                                                                                                                                   CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCCCGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGC               >  1:627/1‑235                                                                                                                                                                                                                                   CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGA                                                              >  1:463817/1‑188                                                                                                                                                                                                                                   CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTC                                                                                    >  2:1073861/1‑166                                                                                                                                                                                                                                    CGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACTTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCT             <  1:914297/236‑1                                                                                                                                                                                                                                        gCCGGCGCCTGGATCAGTGTTTCGCGCTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATCCCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGG                                                      <  2:208830/190‑1                                                                                                                                                                                                                                          CGGCGCCTGGGTCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGG                                 <  2:205101/210‑1                                                                                                                                                                                                                                          CGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGTGACG       <  1:1116018/236‑1                                                                                                                                                                                                                                            GCGCCTGGCTCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCGTCTCGCTGACGTCTTCG                                                                                                                                      <  2:113009/107‑1                                                                                                                                                                                                                                             CGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGTGACG       <  2:946111/233‑1                                                                                                                                                                                                                                              GCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGC                    <  1:790653/219‑1                                                                                                                                                                                                                                               CCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGTGACGAAGCG  >  1:1072127/1‑236                                                                                                                                                                                                                                               CCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCA                                                                                                                                                                                                     <  1:816874/41‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3970372‑3970610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGTGACGAAGCG  <  AE015451/3970594‑3970360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.