New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4064237 =	82 (0.950)	6 (0.070)	6/338	NT	8.0%	coding (102/2088 nt)	PP_3581	conserved membrane protein of unknown function
	?	AE015451	4064292 =	60 (0.740)					coding (47/2088 nt)	PP_3581	conserved membrane protein of unknown function

GAATTGACCACGCGCAAGGGCGGGGCGCTGGGGTTATTGGATCCATTCCCATTCGCAAAAACCCCGTGCGTTTCGCTTAAGCTTGAGTACAATCGTCAGCTTTTGCCGGGCCCCCTTTCCCGGCGCTGGAACTCTCAATGCTGACCGGTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4064475‑4064237 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgccacgCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACCGGTCAGCATTGAGAGTTCCAGCGCCGGGAAAGGGGGCCCGGCAAAAGCTGACGATTGTACTCAAGCTTAAGCGAAACGCACGGGGTTTTTGCGAATGGGAATGGATCCAATAACCCCAGCGCCCCGCCCTTGCGCGTGGTCAATTCTGCTCGGCAAACGCCTGCTCTGCATCCCAGCCGCCGCCCAACGCAGC  >  AE015451/4064292‑4064522                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAATTGACCACGCGCAAGGGCGGGGCGCTGGGGTTATTGGATCCATTCCCATTCGCAAAAACCCCGTGCGTTTCGCTTAAGCTTGAGTACAATCGTCAGCTTTTGCCGGGCCCCCTTTCCCGGCGCTGGAACTCTCAATGCTGACCGGTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCG                                                                                                                                                                                                                                              <  2:1286974/234‑1                                                                              TAAGCTTGAGTACAATCGCCAGCTTTTGCCGGGCCCCCTTTCCCGGCGCTGGACCTCTCAATGCTGACCGGTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGCACAGCGAAATCAACACCAGCGA                                                                                                                                                                                                                  <  1:204889/185‑1                                                                                AGCTTGAGTACAATCGTCAGCTTTTGCCGGGCCCCCTTTCCCGGCGCTGGAACTCTCAATGCTGACCGGTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACCGGTCAGCATT                                                                                                                                                                                         <  1:1247979/208‑1                                                                                                               CCCCCTTTCCCGGCGCTCGCACTCTCACTGCTGCCCGGTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTAC                                                                                                                                                                                                    <  1:297327/166‑1                                                                                                                      TCCCGGCGCTGGAACTCTCAATGCTGACCGGTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACCGGTCAGCAT                                                                                                                                                                                          <  2:799122/169‑1                                                                                                                                          ATGCTGACCGGTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACC                                                                                                                                                                                                   <  2:108478/140‑1                                                                                                                                                    GTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGCAC                                                                                                                                                                                                                                      >  1:999452/1‑95                                                                                                                                                    GTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGCAC                                                                                                                                                                                                                                      <  2:999450/95‑1                                                                                                                                                           CTCCTCTGCGCTGGTGTTGAGTGCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCG                                                                                                                                                                                                                                              <  2:415754/80‑1                                                                                                                                                             CCTCTTCGCTGGGGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACATGACCGGCCGCATCG                                                                                                                                                                                                                                              <  2:294372/78‑1                                                                                                                                                                                   GCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACCGGTCAGCATTGAGAGTTCCAGCGC                                                                                                                                                                           <  2:751741/123‑1                                                                                                                                                                                                                                            CACGCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACCGGTCAGCATTGAGAGTTCCAGCGCCGGGAAAGGGGGCCCGGCAAAAGCTGACGATTGTACTCAAGCTTAAGCGAAACGCACGGGGTTTTTGCGAATGGGAATGGATCCAATAACCCCAGCGCCCCGCCCTTGCGCGTGGTCAATTCTGCTCGGCAAACGCCTGCTCTGCATCCCAGCCGCCGCCCAACGCAGC  <  1:1511611/235‑1                                                                                                                                                                                                                                              CGCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACCGGTCAGCATTGAGAGTTCCAGCGCCGGGAAAGG                                                                                                                                                                  >  2:852737/1‑73                                                                                                                                                                                                                                               GCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACCGGTCAGCATTGAGAGTTCCAGCGCCGGGAAAGGGGGCCCGGCAAAAGCTGACGATTGTACTCAAGCTTAAGCGAAACGCACGGGGTTTTTGCGAATGGGAATGGATCCAATAACCCCAGCGCCCCGCCCTTGCGCGTGGTCAATTCTGCTCGGCAAACGCCTGCTCTGCATCCCAGCCGCCGCCCAAC       <  2:1236521/227‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAATTGACCACGCGCAAGGGCGGGGCGCTGGGGTTATTGGATCCATTCCCATTCGCAAAAACCCCGTGCGTTTCGCTTAAGCTTGAGTACAATCGTCAGCTTTTGCCGGGCCCCCTTTCCCGGCGCTGGAACTCTCAATGCTGACCGGTAGCTACTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCGATCCTGGCATCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4064475‑4064237 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgccacgCACAGCGAAATCAACACCAGCGAAGAGGAGTAGCTACCGGTCAGCATTGAGAGTTCCAGCGCCGGGAAAGGGGGCCCGGCAAAAGCTGACGATTGTACTCAAGCTTAAGCGAAACGCACGGGGTTTTTGCGAATGGGAATGGATCCAATAACCCCAGCGCCCCGCCCTTGCGCGTGGTCAATTCTGCTCGGCAAACGCCTGCTCTGCATCCCAGCCGCCGCCCAACGCAGC  >  AE015451/4064292‑4064522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.