New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4192459 =	98 (1.140)	7 (0.090)	7/316	NT	7.1%	intergenic (+65/‑584)	PP_5613/PP_5614	protein of unknown function/protein of unknown function
	?	AE015451	4192479 =	97 (1.270)					intergenic (+85/‑564)	PP_5613/PP_5614	protein of unknown function/protein of unknown function

GCGTCAGCGCTATCCAGCTTTTCAAGCTGTAGTCCAACGCCTTGGCCGTAGCCGATCCTTCGGGCACAAGCTCGCGCTGAGCTCGCATGGCCCACGCCCGCCGCAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4192701‑4192459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcatccatggatgcggcAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCATGCGAGCTCAGCGCGAGCTTGTGCCCGAAGGATCGGCTACGGCCAAGGCGTTGGACTACAGCTTGAAAAGCTGGATAGCGCTG  >  AE015451/4192479‑4192697                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCGTCAGCGCTATCCAGCTTTTCAAGCTGTAGTCCAACGCCTTGGCCGTAGCCGATCCTTCGGGCACAAGCTCGCGCTGAGCTCGCATGGCCCACGCCCGCCGCAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGC                                                                                                                                                                                                                                               >  2:1021469/1‑225                         AGCTGTAGTCCAACGCCTTGGCCGTAGCCGATCCTTCGGGCACAAGCTCGCGCTGAGCTCGCATGGCCCACGCCCGCCGCAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGCGGCAGCAATTGCCCGATGTC                                                                                                                                                                                                            <  1:493991/236‑1                                           TGGCCGTAGCCGATCCTTCGGGCACAAGCTCGCGCTGAGCTCGCATGGCCCACGCCCGCCGCAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGC                                                                                                                                                                                                                                >  2:1188583/1‑198                                                          CTTCGGGCACAAGCTCGCGCTGAGCTCGCATGGCCCACGCCCGCCGCAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCAT                                                                                                                                                                                                                                      >  2:223603/1‑177                                                              GGGCACAAGCTCGCGCTGAGCTCGCATGGCCCACGCCCGCCGCAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACT                                                                                                                                                                       <  1:1286145/236‑1                                                                                          cCCCACGCCCGCCGCAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGC                                                                                                                                                                                                                                <  1:399879/150‑1                                                                                           CCCACGCCCGCCGCAAGTACTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCC                                                                                                                                                                    <  1:201835/210‑1                                                                                                        CAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTT                                                                                                                              <  1:1188586/235‑1                                                                                                                                            ACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGG                                                                                                                                      <  2:869447/191‑1                                                                                                                                                                                                                       GCAATTGCTGCCGCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCATGCGAGCTCAGCGCGAGCTTGTGCCCGAAGGATCGGCTACGGCCAAGGCG                                   <  1:869449/215‑1                                                                                                                                                                                                                          ATTGCTGCCGCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCATGCGAGCTCAGCGCGAGCTTGTGCCCGAAGGATCGGCTACGGCCAAGGCGTTGGACTACAGCTTGAAAAGCTG            >  1:852391/1‑235                                                                                                                                                                                                                                 CCGCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCATGCGAGCTCAGCGCGAGCTTGTGCCCGAAGGATCGGCTCCGGCCAAGGCGTTGGACTACAG                        >  2:92330/1‑216                                                                                                                                                                                                                                  CGCATCCATGGATGGGGCAGCAATTGCCCGATGTCACTGATCTTTTG                                                                                                                                                                                                <  2:575796/47‑1                                                                                                                                                                                                                                  CGCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCATGCGGGCT                                                                             >  1:404373/1‑162                                                                                                                                                                                                                                   GCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCATGCGAGCTCAGCGCGAGCTTGTGCCCGAAGGATCGGCTACGGCCAAGGCGTTGGACTACAGCTTGAAAAGCTGGATAGCGCTG  <  1:820933/236‑1                                                                                                                                                                                                                                   GCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCATGCGAGCTCAGCGCGAGCTTGTGCCCGAAGGATCGG                                                 >  2:1197469/1‑189                                                                                                                                                                                                                                   GCATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGC                                                                                             >  2:911528/1‑145                                                                                                                                                                                                                                    CATCCATGGATGCGGCAGCAATTGCCCGATGTCACTGATC                                                                                                                                                                                                     <  2:555284/40‑1                                                                                                                                                                                                                                         ATGGATGCGGCAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCAT                                                                                    >  2:884446/1‑148                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCGTCAGCGCTATCCAGCTTTTCAAGCTGTAGTCCAACGCCTTGGCCGTAGCCGATCCTTCGGGCACAAGCTCGCGCTGAGCTCGCATGGCCCACGCCCGCCGCAAGTTCTTCGACCTAAATGTGGCGAACAAAAGCCAACTGGCAGAGCAGGCACTAAGCTGCTAGGGAGTTTTCAGCAACTTGGTACCTACCCAAAAGATCAGTGACATCGGGCAATTGCTGCCGCATCCATGGATGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4192701‑4192459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcatccatggatgcggcAGCAATTGCCCGATGTCACTGATCTTTTGGGTAGGTACCAAGTTGCTGAAAACTCCCTAGCAGCTTAGTGCCTGCTCTGCCAGTTGGCTTTTGTTCGCCACATTTAGGTCGAAGAACTTGCGGCGGGCGTGGGCCATGCGAGCTCAGCGCGAGCTTGTGCCCGAAGGATCGGCTACGGCCAAGGCGTTGGACTACAGCTTGAAAAGCTGGATAGCGCTG  >  AE015451/4192479‑4192697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.