New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4275476 =	72 (0.840)	6 (0.080)	6/324	NT	8.6%	coding (1433/1500 nt)	glcD	glycolate oxidase, putative FAD‑linked subunit
	?	AE015451	4275492 =	62 (0.790)					coding (1449/1500 nt)	glcD	glycolate oxidase, putative FAD‑linked subunit

GGGTCGTAGCTGACGATGCCGCGGTGCTTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4275715‑4275476 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgaattcggcgcCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTACGACC  >  AE015451/4275492‑4275714                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGGTCGTAGCTGACGATGCCGCGGTGCTTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCC                                                                                                                                                                                                                                            >  1:88073/1‑229                    CGCGGTGCTTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGA                                                                                                                                                                                                                                          <  2:1054723/212‑1                                                                                                          GTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGA                                                                                                                                                                   >  1:943912/1‑197                                                                                                                        CGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCC                                                                                                                                                                                                                                            >  2:1053508/1‑110                                                                                                                                                                                GAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTAC                                                                                                          >  2:943910/1‑184                                                                                                                                                                                 acGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGGATCCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAG                                                                                                                                                       <  2:1292262/136‑1                                                                                                                                                                                    CGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGCGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCGTCTGGTGAGCAGGGACCGCGA                                                                                                                                                             >  2:1333349/1‑129                                                                                                                                                                                                              CCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGT                                                                                                >  2:1098815/1‑164                                                                                                                                                                                                                     TGCACGTGCGGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAG                                                                                                                           <  1:856842/130‑1                                                                                                                                                                                                                                  CGCCGAATTCGGCGCCCTGCACGTGCCCCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTA       <  1:448312/233‑1                                                                                                                                                                                                                                  CGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTAC      >  1:916825/1‑234                                                                                                                                                                                                                                  CGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTAC      >  1:1364106/1‑234                                                                                                                                                                                                                                   cCCGGATTCGGCGCCCTGCACGTGCACCAGGGGCAGCTGCCCTTCCCCGTGCTGGAGCGCTTCTCATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAG                                                                          <  1:544420/164‑1                                                                                                                                                                                                                                     CGACTTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGCGCGCTTCTGATGCGCATGGACCGCGACATGAGCCAAACGC                                                                                                                                               >  2:110220/1‑94                                                                                                                                                                                                                                     CGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTACGACC  <  1:1326583/235‑1                                                                                                                                                                                                                                     CGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAG                                                                               >  2:127357/1‑158                                                                                                                                                                                                                                       AATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTC                                                                  >  1:842147/1‑169                                                                                                                                                                                                                                               GCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAG                                                                                                                                                                         <  2:856840/58‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGGTCGTAGCTGACGATGCCGCGGTGCTTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4275715‑4275476 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgaattcggcgcCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTACGACC  >  AE015451/4275492‑4275714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.