| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 4305165 = | 77 (0.900) | 4 (0.050) | 4/340 | NT | 5.0% | coding (45/915 nt) | PP_3776 | putative permease (RarD protein) |
| ? | AE015451 | 4305190 = | 77 (0.940) | coding (20/915 nt) | PP_3776 | putative permease (RarD protein) | |||||
TGCTCGAGCGCCATGAGATTCCCTTGGTGCTATATACCGAGCAATGGCGTGCTCTGCAGGGGTTGTTGCATGAGGAGATTGAACGTTGGACCCGCCAGGGCCGCGCGCACTGCCGTTTTGACGACGCCGGCGTGCTGCACTGGTCCTACGAGATCATCGAGTTCTCATTCACGCCGTTAGCCGAGTGACCACCATGGCCGGAAAAACCTTCGACGCGGCAGCGGGATTATCTGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4305402‑4305165‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgcgTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAATGAGAACTCGATGATCTCGTAGGACCAGTGCAGCACGCCGGCGTCGTCAAAACGGCAGTGCGCGCGGCCCTGGCGGGTCCAACGTTCAATCTCCTCATGCAACAACCCCTGCAGAGCACGCCATTGCTCGGTATATAGCACCAAGGGAATCTCATGGCGCTCGAGCAATGACCAATCGATCTT > AE015451/4305190‑4305418 gGCTCGAGCGCCATGAGATTCCCTTGGTGCTATATACCGAGCAATGGCGTGCTCTGCAGGGGTTGTTGCATGAGGAGATTGAACGTTGGACCCGCCAGGGCCGCGCGCACTGCCGTTTTGACGACGCCGGCGTGCTGCACTGGTCCTACGAGATCATCGAGTTCTCATTCACGCCGTTAGCCGAGTGACCACCATGGCCGGAAAAACCTTCGACGCGGCAGCGGGATTATCTGCCG < 2:1172100/235‑1TGCTCGAGCGCCATGAGATTCCCTTGGTGCTATATACCGAGCAATGGCGTGCTCTGCAGGGGTTGTTGCATGAGGAGATTGAACGTTGGACCCGCCAGGGCCGCGCGCACTGCCGTTTTGACGACGCCGGCGTGCTGCACTGGTCCTACGAGATCATCGAGTTCTCATTCACGCCGTTAGCCGAGTGACCACCATGGCCGGAAAAACCTTCGACGCGGCAGCGGGATTATCT < 2:1326787/232‑1 CTATATACCGAGCAATGGCGTGCTCTGCAGGGGTTGTTGCATGAGGAGATTGAACGTTGGACCCGCCAGGGCCGCGCGCACTGCCGTTTTGACGACGCCGGCGTGCTGCACTGGTCCTACGAGATCATCGAGTTCTCATTCACGCCGTTAGCCGAGTGACCACCATGGCCGGAAAAACCTTCGACGCGGCAGCGGGATTATCTGCCGCGTCGAAGGTTTTTCCGGCCATGGTGGT < 1:643423/235‑1 AATGGCGTGCTCTGCAGGGGTTGTTGCATGAGGAGATTGAACGTTGGACCCGCCAGGGCCGCGCGCACTGCCGTTTTGACGACGCCGGCGTGCTGCACTGGTCCTACGAGATCATCGAGTTCTCATTCACGCCGTTAGCCGAGTGACCACCATGGCCGGAAAAACCTTCGACGCGGCAGCGGGATTATCTGC > 2:741246/1‑192 CCGCCAGGGCCGCGCGCACTGCCGTTTTGACGCCGCCGGCGTGCTGCACTGGTCCTACGAGATCTTCGAGTTCTCATTCACGCCGTTAGCCGAGTGACCACCATGGCCGGAAAAACCTTCGACGCGGCAGCGGGATTATCTGCCGCGTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAATGAGAACTCGAT < 1:396944/205‑1 ACGAGATCATCGAGTTCTCATTCACGCCGTTAGCCGAGTGACCCCCATGGCCGGAAAAACCTTCGACGCGGCAGCGGGATTATCTGCCGCGTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGC < 1:166838/132‑1 AAAACCTGCGACGCGGCAGCGGGATTATCTGCCGCGTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAAT < 2:87954/83‑1 cGCCGCGTCGAAGGTTGTTCCGGCCCTGGTGGCCACCCGGCGAACGGCGGGAATGAGAACTCGATGATCGCGTAGGACCAGTGCAGCACGCCGGCGTCGTCAAAACGGCAGTGCGCGCGGCCCTGGCGGGTCCAACGTTCAATCTCCTCATGCAACAACCCCTGCAGAGCACGCCATTGC < 2:339680/179‑1 CCGCGTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAATGAGAACTCGATGATCTCGTAGGACCAGTGCAGCACGCCGGCGTCGTCAAAACGGCAGTGCGCGCGGCCCTGGCGGGTCCAACGTTCAATCTCCTCATGCAACAACCCCTGCAGAGCACGCCATTGCTCGGTATATAGCACCAAGGGAATCa > 2:558528/1‑202 CCGCGTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAATGAGAACTCGATGATCTCGTAGGACCAGTGCAGCACGCCGGCGTCGTCAAAACGGCAGTGCGCGCGGCCCTGGCGGGTCCAACGTTCAATCTCCTCATGCAACAACCCCTGCAGAGCACGCCATTGCTCGGTA > 1:598951/1‑184 CCGCGTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAATGAGAACTCGATGATCTCGTAGGACCAGTGCAGCACGCCGGCGTCGTCAAAACGGCAGTGCGCGCGGCCCTGGCGGGTCCAACGTTCAATCTCCTCATGCAACAACCCCTGCAGAGCACGCCATTGCTCGGTA < 2:598949/184‑1 CCGCGTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAATGAGAACTCGATGATCTCGTAGGACCAGTGCAGCACGCCGGC > 2:335820/1‑93 CGCGTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAATGAGAACTCGATGATCTCGTAGGACCAGTGCAGCACGCCGGCGTCGTCAAAACGGCAGTGCGCGCGGCCCTGGCGGGTCCAACGTTCAATCTCCTCATGCAACAACCCCTGCAGAGCACGCCATTGCTCGGTATATAGCACCAAGGGAATCTCATGGCGCTCGAGCAATGACCAATCGATCTT > 2:760281/1‑233 TGCTCGAGCGCCATGAGATTCCCTTGGTGCTATATACCGAGCAATGGCGTGCTCTGCAGGGGTTGTTGCATGAGGAGATTGAACGTTGGACCCGCCAGGGCCGCGCGCACTGCCGTTTTGACGACGCCGGCGTGCTGCACTGGTCCTACGAGATCATCGAGTTCTCATTCACGCCGTTAGCCGAGTGACCACCATGGCCGGAAAAACCTTCGACGCGGCAGCGGGATTATCTGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4305402‑4305165‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgcgTCGAAGGTTTTTCCGGCCATGGTGGTCACTCGGCTAACGGCGTGAATGAGAACTCGATGATCTCGTAGGACCAGTGCAGCACGCCGGCGTCGTCAAAACGGCAGTGCGCGCGGCCCTGGCGGGTCCAACGTTCAATCTCCTCATGCAACAACCCCTGCAGAGCACGCCATTGCTCGGTATATAGCACCAAGGGAATCTCATGGCGCTCGAGCAATGACCAATCGATCTT > AE015451/4305190‑4305418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |