New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4418726 =	97 (1.130)	8 (0.100)	6/332	NT	8.5%	coding (242/351 nt)	PP_3908	conserved protein of unknown function
	?	AE015451	4418770 =	81 (1.010)					coding (286/351 nt)	PP_3908	conserved protein of unknown function

GCGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4418972‑4418726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcgtcagTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGCCGGA  >  AE015451/4418770‑4419004                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGC                                                                                                                                                                                                                                                        >  1:1208995/1‑236         AGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGC                                                                                                                                                                                                                                                        <  2:636785/228‑1             CGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTC                                                                                                                                                                                                                                               <  2:544466/233‑1                               CAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGC                                                                                                                                                                                                                                                    <  2:886029/210‑1                                    TCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGT                                                                                                                                                                                                                                                <  1:145209/209‑1                                                AGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGat                                                                                                                                                                                                                                           >  1:1173558/1‑200                                                                 GTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCGTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAG                                                                                                                                                                                         <  1:50739/235‑1                                                                    tgAGCGGTCCGCGAAGGGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTGCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGG                                                                                                                                                                                                    <  2:363375/219‑1                                                                                                                  ACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGGAAAAAGCTGGCG                                                                                                                                                                                                                                                   <  2:144547/128‑1                                                                                                                     TCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAG                                                                                                                                                                                         <  1:632223/183‑1                                                                                                                            AGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGGCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAG                                                                                                                                                                                                                     <  1:741959/148‑1                                                                                                                                    CGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTG                                                                                                                                                                                                                           <  2:1286154/134‑1                                                                                                                                          TCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGGGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCG                                                                                                                                                                                 <  2:1173555/170‑1                                                                                                                                                CGGTGGCACTAGCGCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGTCGAGCTTAAGCGTTACCCAGG                                                                                                                                                                                                    <  2:11442/145‑1                                                                                                                                                                                                                  CGCCAGTTTTGGCGAGATGTAAAAAGCTGCCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACG                                                                                                                                                                                               <  2:1510610/84‑1                                                                                                                                                                                                                                                CGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGC                                                                                                                           <  2:1064742/122‑1                                                                                                                                                                                                                                                 GCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTC                       <  1:643512/221‑1                                                                                                                                                                                                                                                  CGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTC                                                                                   >  2:1316180/1‑160                                                                                                                                                                                                                                                  CGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTC                                                                                   <  1:1316183/160‑1                                                                                                                                                                                                                                                    TCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGC      <  1:622177/235‑1                                                                                                                                                                                                                                                       GTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGCCGGA  <  1:1485371/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4418972‑4418726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcgtcagTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGCCGGA  >  AE015451/4418770‑4419004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.