New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4567403	69 (0.800)	4 (0.050)	3/340	NT	6.6%	coding (1072/1743 nt)	treZ	malto‑oligosyltrehalose trehalohydrolase
	?	AE015451	= 4567466	47 (0.570)					coding (1135/1743 nt)	treZ	malto‑oligosyltrehalose trehalohydrolase

CGTGTGGCTGGTGCTGGAGAACGAGCACAACCAGGCGGGCCTGCTGGAACAGGGTTACGACGCCCAGTGGAACGATGACGGCCACAATGCCCTGCACGTGCTGCTGACCGGTGAAACCGAAGGTTACTATGCCGACTACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4567165‑4567403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccagcgCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGAAGGCGCTGGGCGGCAAATGCCCGCTGGGTTCGCCGCGTGGTTTGCCGTGCCGGTTGGCCTGGCCCTGGAACACGAAACCTTCGCCAAGGCACCGTGCCAGTTGGTCGATGGGGCGATGCTGGTAGTCGGCATAGTAACCTTCGGTTTCACCGGTCAGC  <  AE015451/4567466‑4567267                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGTGTGGCTGGTGCTGGAGAACGAGCACAACCAGGCGGGCCTGCTGGAACAGGGTTACGACGCCCAGTGGAACGATGACGGCCACAATGCCCTGCACGTGCTGCTGACCGGTGAAACCGAAGGTTACTATGCCGACTACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACC                                                                                                                                                                                                               >  1:863943/1‑234                         GCACAACCAGGCGGGCCTGCTGGAACAGGGTTACGACGCCCAGTGGAACGATGACGGCCACAATGCCCTGCACGTGCTGCTGACCGGTGAAACCGAAGGTTACTATGCCGACTACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCA                                                                                                                                                                                                             >  2:1457928/1‑212                                                             CGCCCAGTGGAACGATGACGGCCACAATGCCCTGCACGTGCTGCTGACCGGTGAAACCGAAGGTTACTATGCCGACTACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAACCCACGCGGCGAACCCAGCG                                                                                                                                                                                                          <  2:440249/179‑1                                                                  AGTGGAACGATGACGGCCACAATGCCCTGCACGTGCTGCTGACCGGTGAAACCGAAGGTTACTATGCCGACTACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCA                                                                                                                                                                                                             >  1:974719/1‑171                                                                                                   TGCTGCTGACCGGTGAAACCGAAGGTTACTATGCCGACTACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCAGCGCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGAAGGCGCTGGGtgagc                                                                                                                                                 <  1:1385893/198‑6                                                                                                   TGCTGCTGACCGGTGAAACCGAAGGTTACTATGCCGACTACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCAGCGCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGAAGGCGCTGGGtgagc                                                                                                                                                 >  2:1385890/1‑193                                                                                                                                          ACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCAGCGCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGA                                                                                                                                                                <  1:585047/144‑1                                                                                                                                          ACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCAGCGCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGA                                                                                                                                                                >  2:585045/1‑144                                                                                                                                                                         GTGCCTTGGCGAAGGTTTCGTGTGCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCAGCG                                                                                                                                                                                                          <  2:256234/71‑1                                                                                                                                                                                                                                          CCAGCGCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGAAGGCGCTGGGCGGCAAATGCCCGCTGGGTTCGCCGCGTGGTTTGCCGTGCCGGTTGGCCTGGCCCTGGAACACGAAACCTTCGCCAAGGCACCGTGCCAGTTGGTCGATG                                                  >  2:1521307/1‑158                                                                                                                                                                                                                                           CAGCGCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGAAGGCGCTGGGCGGCAAATGCCCGCTGGGTTCGCCGCGTGGTTTGCCGTGCCGGTTGGCCTGGCCCTGGAACACGAAACCTTCGCCAAGGCACCGTGCCAGTTGGTCGATGGGGCGATGCTGGTAGTCGGCATAGTAACCTTCGGTTTCACCGGTCAGC  >  1:1300033/1‑205                                                                                                                                                                                                                                              CGCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGAAGGCGCTGGGCGGCAAATGCCCGCTGGGTTCGCCGCGTGGTTTGCCGTGCCGGTTGGCCTGGCCCTGGAACACGAAACCTTCGCCAAGGCACCGTGCCAGTTGGTCGATGGGGCGA                                            <  1:931447/160‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGTGTGGCTGGTGCTGGAGAACGAGCACAACCAGGCGGGCCTGCTGGAACAGGGTTACGACGCCCAGTGGAACGATGACGGCCACAATGCCCTGCACGTGCTGCTGACCGGTGAAACCGAAGGTTACTATGCCGACTACCAGCATCGCCCCATCGACCAACTGGCACGGTGCCTTGGCGAAGGTTTCGTGTTCCAGGGCCAGGCCAACCGGCACGGCAAACCACGCGGCGAACCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4567165‑4567403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccagcgCGCGGTTGCCGATCTGGTCGTGGTTCTGCAGGAACAACACGAAGGCGCTGGGCGGCAAATGCCCGCTGGGTTCGCCGCGTGGTTTGCCGTGCCGGTTGGCCTGGCCCTGGAACACGAAACCTTCGCCAAGGCACCGTGCCAGTTGGTCGATGGGGCGATGCTGGTAGTCGGCATAGTAACCTTCGGTTTCACCGGTCAGC  <  AE015451/4567466‑4567267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.