New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4653677	105 (1.220)	6 (0.070)	5/336	NT	5.9%	coding (155/1326 nt)	aceA	isocitrate lyase
	?	AE015451	= 4653754	94 (1.160)					coding (232/1326 nt)	aceA	isocitrate lyase

CTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCATCAGCACAATTAACCCAAGATCGATGCGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4653437‑4653677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagggcgcCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTCGCGTGTCAGTGC  <  AE015451/4653754‑4653526                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCATCAGCACAATTAACCCAAGATCGATGCGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCA                                                                                                                                                                                                                                             <  1:1176535/235‑1                             GATCTGCTCCGAGCATCAGCACAATTAACCCAAGATCGATGCGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCg                                                                                                                                                                                                                                      >  2:527961/1‑213                                      CGAGCATCAGCACAATTAACCCAAGATCGATGCGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGC                                                                                                                                                                                                                                       >  1:1504557/1‑204                                                                      CGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGT                                                                                                                                                                                                                                               >  1:697744/1‑164                                                                                                   CGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACcggcgg                                                                                                                                          >  1:36199/1‑230                                                                                                                           ggGAAAGACTGGGCCGGAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACcggcg                                                                                                                                           <  2:36199/209‑6                                                                                                                                                                                 GCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCtca                                                                                                                                                                                                                                      >  1:266285/1‑63                                                                                                                                                                                     CTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGA                                                                                                                    >  1:1465424/1‑176                                                                                                                                                                                      TGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACG                                                                      >  1:42560/1‑221                                                                                                                                                                                                                             CACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGGGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTa                                                                                                                                >  2:446347/1‑123                                                                                                                                                                                                                                  TTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGT                                                                          >  2:1113277/1‑173                                                                                                                                                                                                                                          CAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTCGCGTGTCAGTG   <  1:1041298/236‑1                                                                                                                                                                                                                                           AGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCGCCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTCGCGTGTCAGTGC  <  1:475101/236‑1                                                                                                                                                                                                                                            GGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGGGGGCACCTGCGGTGATCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGC                                                                                                             <  2:602498/128‑1                                                                                                                                                                                                                                             gggGCCCATGCAGTTGACGAAATCTGTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTCGCGTGTCAGTG   <  2:1164976/230‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCATCAGCACAATTAACCCAAGATCGATGCGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4653437‑4653677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagggcgcCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTCGCGTGTCAGTGC  <  AE015451/4653754‑4653526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.