New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4833372 =	101 (1.170)	6 (0.070)	5/338	NT	6.1%	coding (683/801 nt)	PP_4246	Periplasmic binding protein
	?	AE015451	4833436 =	90 (1.100)					coding (619/801 nt)	PP_4246	Periplasmic binding protein

CTACCACTACGCGTTTGCCAGCTTCAACGCTGACCCGGACTACCTGCGCAAGACATACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4833614‑4833372 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcccTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCC  >  AE015451/4833436‑4833640                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTACCACTACGCGTTTGCCAGCTTCAACGCTGACCCGGACTACCTGCGCAAGACATACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGC                                                                                                                                                                                                                      >  1:195822/1‑236      ACTACGCGTTTGCCAGCTTCAACGCTGACCCGGACTACCTGCGCAAGACATACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCg                                                                                                                                                                                                                     >  1:454879/1‑231                                                        TACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCgg                                                                                                                                                                                                                    >  2:209690/1‑181                                                                 gCCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCA                                                                                                                                                                                          <  1:1360370/199‑1                                                                   CCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTC                                                                                                                                                                                                          >  2:225876/1‑182                                                                                         AACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGT                                                                                                                                                                 <  1:778309/201‑1                                                                                         AACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAAT                                                                                                                                                                                    <  1:225877/182‑1                                                                                           CCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCTTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCC                                                                                                                                                                                                               <  1:639353/153‑1                                                                                                         agtcccGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGT                                                                                                                                                                 <  2:1130774/179‑1                                                                                                           GCCGGCCTCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAA                                                                                                                                                                      <  2:513799/178‑1                                                                                                                    GCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGT                                                                                                                                                                           <  1:696185/164‑1                                                                                                                                  GGTCACGCGTTCCTACCTCAGCGTTTCCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTG                                                                                                                                                                                                             <  2:1182178/116‑1                                                                                                                                      ACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGC                                                                                                                                                                                                                   >  2:19550/1‑106                                                                                                                                      ACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGC                                                                                                                                                                                                                   <  1:19550/106‑1                                                                                                                                                                                                                                             TGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTT     >  1:1324959/1‑209                                                                                                                                                                                                                                                  CCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCGGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACCAGGCCAGGCGTTTGCC  >  2:552542/1‑207                                                                                                                                                                                                                                                   CTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAA                    >  1:584661/1‑188                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTACCACTACGCGTTTGCCAGCTTCAACGCTGACCCGGACTACCTGCGCAAGACATACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4833614‑4833372 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcccTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCC  >  AE015451/4833436‑4833640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.