New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4838438	57 (0.660)	4 (0.050)	4/338	NT	6.9%	coding (202/942 nt)	ccoP‑I	cytochrome c oxidase subunit, cbb3‑type
	?	AE015451	= 4838684	54 (0.660)					coding (448/942 nt)	ccoP‑I	cytochrome c oxidase subunit, cbb3‑type

AGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4838223‑4838438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcgtCGGAACCGTGGCACACCGAGCAGTTGGAGGCAAACAGGCGGCTGCCCATTTTCAGCGCCTGCGGGTCCTTCGCCACTTCTTCTACGGGCATGGCGGCGTATTTGGCGAAGATCGGACCGAACCTGGCATCGGCCTTGTCCATTTCCTTCTGCCATTCATTGGCGCCAGTCCAGCCATTTTCATAGCCCGGCAGGATGCCTTTCCAGTTGCCCAGGCCTGGGTAGAGGATCAGGT  <  AE015451/4838684‑4838451                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCCCCTTGG                                                                                                                                                                                                                                               >  2:1018643/1‑213                               GTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTCCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCG                                                                                                                                                                                                                                             >  2:930584/1‑185                                                                                                                                                                             GCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGTCGGAACCGTGGCACACCGAGCAGTTGGA                                                                                                                                                                                                                <  1:578682/72‑1                                                                                                                                                                             GCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGTCGGAACCGTGGCACACCGAGCAGTTGGA                                                                                                                                                                                                                >  2:578680/1‑72                                                                                                                                                                                              TCTGGCTGTTCGTTGGCACCTTGGCGTCGGAACCGTGGCACACCGAGCAGTTGGAGGCAAACAGGCGGCTGCCCATTT                                                                                                                                                                                         <  1:843986/78‑1                                                                                                                                                                                              TCTGGCTGTTCGTTGGCACCTTGGCGTCGGAACCGTGGCACACCGAGCAGTTGGAGGCAAACAGGCGGCTGCCCATTT                                                                                                                                                                                         >  2:843984/1‑78                                                                                                                                                                                                               ccaTTGGCGTCGGAACCGTGGCACACCGAGCACTTGGAGGCAAACAGGCGGCTGCCCATTTTCAGCGCCTGCGGGTCCTTCGCCACTTCTTCTACGGGCATGGCGGCGTATTTGGCGAAGATCGGACCGAACCTGGCATCGGCCTTGTCCATTTCCTTCTGCCATTCATTGGCGCCAGTCCAGCCATTTTCATAGCCCGGCA                                            <  2:1005864/199‑1                                                                                                                                                                                                                        TCGGAACCGTGGCACACCGAGCAGTTGGAGGCAAACAGGCGGCTGCCCATTTTCAGCGCCTGCGGGTCCTTCGCCACTTCTTCTACGGGCATGGCGGCGTATTTGGCGAAGATCGGACCGAACCTGGCATCGGCCTTGTCCATTTCCTTCTGCCATTCATTGGCGCCAGTCCAGCCATTTTCATAGCCCGGCAGGATGCCTTTCCAGTTGCCCAGGCCTGGGTAGAGGATCAGGT  <  1:1231746/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4838223‑4838438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcgtCGGAACCGTGGCACACCGAGCAGTTGGAGGCAAACAGGCGGCTGCCCATTTTCAGCGCCTGCGGGTCCTTCGCCACTTCTTCTACGGGCATGGCGGCGTATTTGGCGAAGATCGGACCGAACCTGGCATCGGCCTTGTCCATTTCCTTCTGCCATTCATTGGCGCCAGTCCAGCCATTTTCATAGCCCGGCAGGATGCCTTTCCAGTTGCCCAGGCCTGGGTAGAGGATCAGGT  <  AE015451/4838684‑4838451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.