New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5337612	80 (0.930)	3 (0.040)	3/342	NT	3.6%	coding (1062/1443 nt)	PP_4696	Nitrogen regulation protein NR(I)
	?	AE015451	= 5337614	82 (0.990)					coding (1064/1443 nt)	PP_4696	Nitrogen regulation protein NR(I)
Rejected: Frequency below/above cutoff threshold.

AGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTCGCCCGCCAGAGCGCTCGCATCGGCCGCGACGACCTGCACTTCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5337471‑5337612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggccTCGGCCGAGAAGTGCAGGTCGTCGCGGCCGATGCGAGCGCTCTGGCGGGCGAGGAAGACGTTGGCGATCTCGTTGACGTCGCTGCCACGCTCGCGCAGGGCCGGCAGCTTCAGGGCGATGACGTGCAGTCGGTAATACAAGTCTTCACGGAACTGGCCGGCCTTGGCCAGGTTTTTCAGGTCGCGGTGGGTCGCGGCGATCAGGCGCACATCGACCTTTTGCGACTGCACCG  <  AE015451/5337614‑5337383                                                                                                                                                                                                                                                                                                                                                                                        AGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTCGCCCGCCAGAGCGCTCGCATCGGCCGCGACGACCTGCACTTCTCGGC                                                                                                                                                                                                                                           >  2:471243/1‑141                                                     GAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTCGCCCGCCAGAGCGCTCGCATCGGCCGCGACGACCTGCACTTCTCGGCCTCGGCCGAGAAGTGCAGGTCGTCGCGGCCGATGCGCGCGCTCTGGC                                                                                                                                                                                            >  1:1152206/1‑136                                                                                    ACGTCTTCCTCGCCCGCCAGAGCGCTCGCATCGGCCGCGACGACCTGCACTTCTCGGCCTCGGCCGAGAAGTGCAGGTCGTCGCGG                                                                                                                                                                                                               >  2:645041/1‑86                                                                                           CCTCGCCGGCCAGAGCGCTCGCATCGGCCGCGACGACCTGCACTTCTCGG                                                                                                                                                                                                                                            <  2:75846/50‑1                                                                                           CCTCGCCCGCCAGAGCGCTCGCATCGGCCGCGACGACCTGCACTTCTCGGCCTCGGCCGAGAAGTGCAGGTCGTCGCGGCCGATGCGAGCGCTCTGGCGGGCGAGGAAGACGTTGGCGATCTCGTTGACGTCGCTGCCACGCTCG                                                                                                                                             >  2:1275692/1‑145                                                                                                                                          CGGCCTCGGCCGAGAAGTGCAGGTCGTCGCGGCCGATGCGAGCGCTCTGGCGGGCGAGGAAGACGTTGGCGATCTCGTTGACGTCGCTGCCACGCTCGCGCAGGGCCGGCAGCTTCAGGGCGATGACGTGCGGTCGGTAATACAAGTCTTCACGGAACTGGCCGGCCTTGGCCAGGTTTTTCAGGTCGCGGTGGGTCGCGGCGATCAGGCGCACATCGACCTTTTGCGACTGCAC    >  1:115567/1‑235                                                                                                                                           GGCCTCGGCCGATAAGTGCAGGTCGTCGCGGCCGATGCGAGCGCTCTGGCGGGCGAGGAAGACGTTGGCGATCTCGTTGACGTCCCTGCCACGCTCGCGCAGGGCCGGCAGCTTCAGGGCGATGACGTGCAGT                                                                                                         <  1:171140/133‑1                                                                                                                                           GGCCTCGGCCGAGAAGTGCAGGTCGTCGCGGCCGATGCGAGCGCTCTGGCGGGCGAGGAAGACGTTGGCGATCTCGTTGACGTCGCTGCCACGCTCGCGCAGGGCCGGCAGCTTCAGGGCGATGACGTGCAGTCGGTAATACAAGTCTTCACGGAACTGGCCGGCCTTGGCCAGGTTTTTCAGGTCGCGGTGGGTCGCGGCGATCAGGCGCACATCGACCTTTTGCGACTGCACCG  >  1:794607/1‑236                                                                                                                                                                                                                                                                                                                                                                                        AGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTCGCCCGCCAGAGCGCTCGCATCGGCCGCGACGACCTGCACTTCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5337471‑5337612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggccTCGGCCGAGAAGTGCAGGTCGTCGCGGCCGATGCGAGCGCTCTGGCGGGCGAGGAAGACGTTGGCGATCTCGTTGACGTCGCTGCCACGCTCGCGCAGGGCCGGCAGCTTCAGGGCGATGACGTGCAGTCGGTAATACAAGTCTTCACGGAACTGGCCGGCCTTGGCCAGGTTTTTCAGGTCGCGGTGGGTCGCGGCGATCAGGCGCACATCGACCTTTTGCGACTGCACCG  <  AE015451/5337614‑5337383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.