New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5441025	103 (1.200)	6 (0.070)	6/340	NT	5.7%	coding (1559/1653 nt)	PP_4780	putative Acyl‑CoA dehydrogenase
	?	AE015451	= 5441076	102 (1.240)					coding (1508/1653 nt)	PP_4780	putative Acyl‑CoA dehydrogenase

TCCATCTTGCCTGCCTTCTTGGTTAAATACACCCCCATTGATCGGTGTTGGGTTCATTCGCGGGCAAGCCCGCTGCTACAGGGGCCAGGCAGGCGTAGCCCTTGTGACCAATGCCATCACATTTACACCTCGCGGCAGCGCCCCGTACACCCGGCCACCACCGGCCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5440856‑5441025 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaagcTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCCTGCCTGGCCCCTGTAGCAGCGGGCTTGCCCGCGAATGAACCCAACACCGATCAATGGGGGTGTATTTA  <  AE015451/5441076‑5440879                                                                                                                                                                                                                                                                                                                                                                                  TCCATCTTGCCTGCCTTCTTGGTTTAATACACCCCCATTGATCGGTGTTGGGTTCATTCGCGGGCAAGCCCGCTGCTACAGGGGCCAGGCAGGCGTAGCCCTTGTGACCAATGCCATCACATTTACACCTCGCGGCAGCGCCCCGTACACCCGGCCACCACCGGC                                                                                                                                                                                                             >  1:1460438/1‑165                                                                                                                   CATCACATTTACACCTCGCGGCAGCGCCCCGTACACCCGGCCACCACCGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGG                                                                                                                        >  2:870225/1‑136                                                                                                                                    GCGGCAGCGCCCCGTACACCCGGCCACCACCGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTC                                                                                    <  1:710818/155‑1                                                                                                                                    GCGGCAGCGCCCCGTACACCCGGCCACCACCGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTC                                                                                    >  2:710816/1‑155                                                                                                                                      GGCAGCGCCCCGTACACCCGGCCACCACCGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACCTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGG                                                                                                                                 >  2:1338083/1‑108                                                                                                                                        CAGCGCCCCGTACACCCGGCCACCACCGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCCTGCCTGGCCCCTGTAGCAGCGGGCTTGCCCGCGAATGAACCCAACACCGATCAATGGGGGTGTATTTA  >  2:633714/1‑233                                                                                                                                                CGTACACCCGGCCACCACCGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCC                                                                      >  2:1516458/1‑157                                                                                                                                                                 CCGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCCTGC                                                                   <  1:1516461/143‑1                                                                                                                                                                   GGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCCTGCCTGGCCCCTGTAGCAGCGGGCTTGCCCGCGAATGAACCCAACACCGATCAATG              <  2:899529/194‑1                                                                                                                                                                   GGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCCTGCCTGGCCCCTG                                                         >  2:509527/1‑151                                                                                                                                                                   GGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTAATGCGTTTATCGGCAGCCGCATGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCCTGCCTGGCCCCTGTAGCAGCGGGCTTGCCCGCGAATGAACCCAACACCGATCAATGGGGGT         >  2:1460435/1‑199                                                                                                                                                                       AAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCCTGCCTGGCCCCTGTAGCAGCGGGCTTGCCCGCG                                     <  1:1521722/167‑1                                                                                                                                                                                                                                                                                                                                                                                  TCCATCTTGCCTGCCTTCTTGGTTAAATACACCCCCATTGATCGGTGTTGGGTTCATTCGCGGGCAAGCCCGCTGCTACAGGGGCCAGGCAGGCGTAGCCCTTGTGACCAATGCCATCACATTTACACCTCGCGGCAGCGCCCCGTACACCCGGCCACCACCGGCCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5440856‑5441025 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaagcTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCGGTGGTGGCCGGGTGTACGGGGCGCTGCCGCGAGGTGTAAATGTGATGGCATTGGTCACAAGGGCTACGCCTGCCTGGCCCCTGTAGCAGCGGGCTTGCCCGCGAATGAACCCAACACCGATCAATGGGGGTGTATTTA  <  AE015451/5441076‑5440879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.