New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5559942	104 (1.210)	8 (0.100)	7/336	NT	7.4%	coding (555/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	AE015451	= 5559943	103 (1.270)					coding (554/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

GACGCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5559730‑5559942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaacagcAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCTGGCGATCGCTGATCGCCTGGCGTCGCGCTACCCGGA  <  AE015451/5559943‑5559718                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACGCCAGGCGATCAGCGATCGCCAGATGGTCGTCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCTCGCGGGCTTCAGCCAGTACTTCCCGACCACGACACAGCTCGACCAGGGCGCGCAGCCTGCTTCCCAGGTCTTTCGGCAGGTAGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAA                                                                                                                                                                                                                                        >  2:924698/1‑209                                       CGCCGCCAGCACGCCGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAAC                                                                                                                                                                                                                                       <  2:251803/172‑1                                                                                             TACTTCCCGGCCACCACACAGCTCGACCAGGGGGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCGGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAAC                                                                                                                                                                                                                                       <  2:344929/118‑1                                                                                                                                                   TTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACGGCCTTGCGTTGCATGGCGTCGAA                                                                                                                                                                                                                                        >  2:1198438/1‑63                                                                                                                                                               GGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGGAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTCGGCAGCATGCT                                                                                                                                               >  1:1034385/1‑140                                                                                                                                                                GCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCG                                                                                          >  2:978725/1‑192                                                                                                                                                                  CGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATTGCGTCGAACAGCAGCTGTTCGACGCCATGCAAAGCAAGGCTGTCGAT                                                                                                                                                                                                 >  1:247781/1‑87                                                                                                                                                                  CGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGGGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGT                                                                                                                                   >  1:429973/1‑149                                                                                                                                                                      AGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGGCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCAGGCgg                                                                                                                                              >  2:1321161/1‑132                                                                                                                                                                                              TTGCGTTGCATGGCGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGC                                                                >  2:960585/1‑188                                                                                                                                                                                               TGCGTTGCATGGCGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCTGGCGATCGCTGATCGCCTGGCG                <  1:978727/235‑1                                                                                                                                                                                                  GTTGCATGGCGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAACACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTGCTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTac                                                            >  1:1434730/1‑186                                                                                                                                                                                                              CGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCCGGCGATCGCTGATCGCCTGGCGTCGCGCTACCCGGA  >  2:917933/1‑234                                                                                                                                                                                                                AACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATG                                             >  2:1408140/1‑189                                                                                                                                                                                                                   gGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCTGGCGATCGCTGATCGCCTGGCGTCGCGCT         <  1:60046/221‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACGCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5559730‑5559942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaacagcAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCTGGCGATCGCTGATCGCCTGGCGTCGCGCTACCCGGA  <  AE015451/5559943‑5559718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.