New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5638869	87 (1.010)	4 (0.050)	4/334	NT	4.6%	coding (1403/1443 nt)	PP_4949	putative peptidase, TldD/PmbA family
	?	AE015451	= 5639034	86 (1.070)					coding (126/1320 nt)	PP_4950	conserved protein of unknown function
Rejected: Frequency below/above cutoff threshold.

CGTTCCTGGTCCATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5638625‑5638869 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccggcctgGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTTGCCACAGTTGGGC  <  AE015451/5639034‑5638807                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGTTCCTGGTCCATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCT                                                                                                                                                                                                                                                <  1:899652/235‑1  GTTCCTGGTCCATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCG                                                                                                                                                                                                                                              >  1:646246/1‑236        GGTCCATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGC                                                                                                                                                                                                                                         >  1:745126/1‑235                                                            GTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGGACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGT                                                                                                                                                                                    <  2:646244/236‑1                                                               GATTGAAAATGGCGAGCCCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTTCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTTCGGGTCGGCCACGCCTCGCCGGC                                                                                                                                                                                                                                         >  2:1391523/1‑180                                                                          GCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTG                                                                                                                                                                                                                                      >  1:749860/1‑172                                                                                TCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCG                                                                                                                                                                <  1:1079541/236‑1                                                                                            TCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGGg                                                                                                                                                                                                                                    >  1:275787/1‑155                                                                                                                                           CTGTCGGCGGTTGGCGACCACAGTCCCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCG                                                                                                                                                                                           <  2:304333/150‑1                                                                                                                                                                                                                     GGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTC                                                                                                          >  1:1145362/1‑157                                                                                                                                                                                                                                           TCGCCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTTGCCACAGTTG     <  1:1408121/236‑1                                                                                                                                                                                                                                            CGCCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTTGCCACAGTTGG    >  1:1079098/1‑236                                                                                                                                                                                                                                              CCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTTGCCACAGTTGGGC  >  1:368453/1‑236                                                                                                                                                                                                                                                GGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGT                                                                                                                                                                          <  1:721202/66‑1                                                                                                                                                                                                                                                GGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGT                                                                                                                                                                          >  2:721200/1‑66                                                                                                                                                                                                                                                 GCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGCAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCAGCAGGCGTCTCCTCCGAATACACCGATCTGGCGGAACACA                                                                 >  2:10317/1‑170                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGTTCCTGGTCCATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5638625‑5638869 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccggcctgGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTTGCCACAGTTGGGC  <  AE015451/5639034‑5638807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.