New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5650169 =	103 (1.200)	5 (0.060)	5/336	NT	5.2%	coding (1024/2127 nt)	PP_4959	diguanylate cyclase
	?	AE015451	5650216 =	86 (1.060)					coding (977/2127 nt)	PP_4959	diguanylate cyclase

TGGACATGTCGGCAGTGCGTAACTTGCACCAGCAGCTGGAATACCAGGCCATTACTGACCCGCTAACCGGCCTGCTCAACCGCCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5650408‑5650169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggccgagcGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGCTGCTGGTGCAAGTTACGCACTGCCGACATGTCCAGCACGGTCACCACCATGGCCTGTTGATCGGCCGGCAACGGC  >  AE015451/5650216‑5650449                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGGACATGTCGGCAGTGCGTAACTTGCACCAGCAGCTGGAATACCAGGCCATTACTGACCCGCTAACCGGCCTGCTCAACCGCCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCC                                                                                                                                                                                                                                                >  1:368858/1‑236   GACATGTCGGCAGTGCGTAACTTGCACCAGCAGCTGGAATACCAGGCCATTACTGACCCGCTAACCGGCCTGCTCAACCGCCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCG                                                                                                                                                                                                                                               <  2:694028/235‑1                             CCAGCAGCTGGAATACCAGGCCATTACTGACCCGCTAACCGGCCTGCTCAACCGCCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGA                                                                                                                                                                                                                                              >  2:849853/1‑210                                                  CATTACTGACCCGCTAACCGGCCTGCTCAACCGCCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGA                                                                                                                                                                                                                                              <  2:725979/189‑1                                                                    CGGCCTGCTCAACCGCCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGA                                                                                                                                                                                                                                              <  2:1090190/171‑1                                                                                   CCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCAGCAACGACTCGCTCGGCCACGAGGCGGTCGACCGGGTGTTGCGCTGGGTGGCCG                                                                                                                                                                                                                                               <  2:1147652/155‑1                                                                                      TGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCG                                                                                                                                                                                                                                               >  2:818722/1‑152                                                                                                                 ACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGAGCGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGC                                                                                                                                                                                               <  1:655379/173‑1                                                                                                                        CGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGAGCcg                                                                                                                                                                                                                                          >  2:96429/1‑121                                                                                                                                               GCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGAGCGAGTCGTTGATGCGCTTGAAGCCATCCA                                                                                                                                                                                                                <  2:993794/126‑1                                                                                                                                                           GTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGG                                                                                                                                                                                                                                                     >  2:452138/1‑77                                                                                                                                                           GTACAGGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCGGGGTGGCCGAGCGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCA                                                                                                                                                                                                          <  2:291620/120‑1                                                                                                                                                                                                      GGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGAGCGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGG                                                                                                             >  2:424664/1‑170                                                                                                                                                                                                                  GGCGACCGGGTGTTGCGCTGGGTGGCCGAGCGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGCTGCTGGTGCAAGTTACGCACTGCCGACATGTCCAGCACGGTCACC                                <  1:424666/235‑1                                                                                                                                                                                                                                          GCCGAGCGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGTCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGCTGCTGGTGCAAGTTACGCACTGCCGACATGTCCAGCACGGTCACCACCATGGCCTGTTGATCGGCCGGCA       <  1:606121/236‑1                                                                                                                                                                                                                                          GCCGAGCGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGCTGCTGGTGCAAGTTACGCACTGCCGACATGTCCAGCACGGTCACCACCATGGCCTGTTGATCGGCCGGCA       <  1:347061/236‑1                                                                                                                                                                                                                                          GCCGAGCGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGCTGCTGGTGCAAGTTACGCACTGCCGACATGTCCAGCACGGTCACCACCATGGCCTGTTGATCGGCCGGCA       <  1:893156/236‑1                                                                                                                                                                                                                                               GCGAGTCGTTGATGCGCTTGAGGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGCTGCTGGTGCAAGTTACGCACTGCCGACATGTCCAGCACGGTCACCACCATGGCCTGTTGATCGGCCGGCAACGGC  <  2:1057430/236‑1                                                                                                                                                                                                                                                CGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGCTGCTGGTGCAAGTTACGCACTGCCGACATGTCCAGCACGGTCACCACCATGGCCTGTTGATCGGCCGGCAACGGC  <  1:278356/235‑1                                                                                                                                                                                                                                                CGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGC                                                                             <  2:1314917/160‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGGACATGTCGGCAGTGCGTAACTTGCACCAGCAGCTGGAATACCAGGCCATTACTGACCCGCTAACCGGCCTGCTCAACCGCCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTGTTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACCGGGTGTTGCGCTGGGTGGCCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5650408‑5650169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggccgagcGAGTCGTTGATGCGCTTGAAGCCATCCAGGTCCATGTACATCAGCGCCTGCGCCTTGTCAGAGCGCTCGTTGCGCAACAGTGCACCTTCAGCCGCCTGGTAGAAACCACGGCGGTTGAGCAGGCCGGTTAGCGGGTCAGTAATGGCCTGGTATTCCAGCTGCTGGTGCAAGTTACGCACTGCCGACATGTCCAGCACGGTCACCACCATGGCCTGTTGATCGGCCGGCAACGGC  >  AE015451/5650216‑5650449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.