New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5734151 =	87 (1.010)	5 (0.060)	5/338	NT	6.3%	coding (1513/1533 nt)	hutH	Histidine ammonia‑lyase
	?	AE015451	5734397 =	65 (0.800)					coding (1267/1533 nt)	hutH	Histidine ammonia‑lyase

CAGGGCCTGGACCTGCGCAAAGGCCTGAAGACTTCGGCCAAGCTGGAGCAGGCGCGCCAGGCGCTGCGCAGTGAGGTGCCGCACTACGACCGTGACCGTTTCTTCGCGCCGGATATCGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5734322‑5734151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcggCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGGCAGGCTGTCGACGCTGTGCGGGTGCGACAAAGCCTTGTTCTCGCTGGCCAGGGCGGCAGCGGTGACCTGGGCGATCATGAAGCCGGAGTTGACCCCACCGTTTTCCACCAGGAACGGCGGCAGCTGGGACATGTGCTTGTCCATCATCAGCGAGATGCGGCGTTCGCTGAGCGAGCCGATTTCG  >  AE015451/5734397‑5734623                                                                                                                                                                                                                                                                                                                                                                                                                 CAGGGCCTGGACCTGCGCAAAGGCCTGAAGACTTCGGCCAAGCTGGAGCAGGCGCGCCAGGCGCTGCGCAGTGAGGTGCCGCACTACGACCGTGACCGTTTCTTCGCGCCGGATATCGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGG                                                                                                                                                                                                                                     >  2:256803/1‑172                             AGACTTCGGCCAAGCTGGAGCAGGCGCGCCAGGCGCTGCGCAGTGAGGTGCCGCACTACGACCGTGACCGTTTCTTCGCGCCGGATATCGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGGCAGGCTGTCGACGCTGTGCGGGTGCGACAAAGCCTTGTTCTCGCTGGC                                                                                                                                          >  1:416878/1‑235                                                                             TGCCGCACTACGACCGTGACCGTTTCTTCGCGCCGGATATCGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTCCCGGCG                                                                                                                                                                                                                                      >  1:269326/1‑95                                                                                CGCACTACGACCGTGACCGTTTCTTCGCGCCGGATATCGAAAAGGCCGGGGACCTGTTGGCCAAGGGCCGTCTGACCGGCTTGCTGCCGGCGGCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTG                                                                                                                                                                                           >  1:375861/1‑135                                                                                   ACTACGACCGTGACCGTTTCTTCGCGCCGGATATCGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGT                                                                                                                                                                                             <  1:893344/130‑1                                                                                                          GCGCCGGATATCGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGG                                                                                                                                                                                          <  1:1466618/110‑1                                                                                                                            GCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGGCA                                                                                                                                                                                        <  1:166245/94‑1                                                                                                                                                                   tgGCCGGCGGCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGGCAGGCTGTCGACGCTGTGCGGGTGCGACAAAGCCTTGTTCTCGCTGGCCAGGGCGGCAGCGGTGACCTGGGCGATCATGAAGCCGGAGTTGACCCCACCGTTTTCCACCAGGAACGGCGGCAGCTGGGACATGT                                                    <  2:858647/185‑1                                                                                                                                                                    TGCCGGCGGCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGGCAGGCTGTCGACGCTGTGCGGGTGCGACAAAGCCTTGTTCTCGCTGGCCAGGGCGGCAGCGGTGACCTGGGCGATCATGAAGCCGGAGTTGACCCCACCGTTTTCCACCAGGAACGGCGGCAGCTGGGACATGTGCTTGTCCATCATCAGCGAGATGCGGCGTTCGCTGAGCGAGCCGATTTCG  <  1:78174/236‑1                                                                                                                                                                     GCCGGCGGGCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGGCAGGCTGTCGACGCTGTGCGGGTGCGACAAAGCCTTGTTCTCGCTGGCCAGGGCGGCAGCGGTGACCTGGGCGATCATGAAGCCGGAGTTGACCCCACCGTTTTCCACCAGGAACGGCGGCAGCTGGGACATGTGCTTGTCCAT                                          <  1:137641/195‑1                                                                                                                                                                            GCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGGCAGGCTGTCGACGCTGTGCGGGTGCGACAAAGCCTTGTTCTCGCTGGCCAGGGCGGCAGCGGTGACCTGGGCGATCATGAAGCCGGAGTTGACCCCACCGTTTTCCACCAGGAACGGCGGC                                                                 >  1:1251764/1‑165                                                                                                                                                                                                                                                                                                                                                                                                                 CAGGGCCTGGACCTGCGCAAAGGCCTGAAGACTTCGGCCAAGCTGGAGCAGGCGCGCCAGGCGCTGCGCAGTGAGGTGCCGCACTACGACCGTGACCGTTTCTTCGCGCCGGATATCGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5734322‑5734151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcggCCGGGGCCATCGACACGTGGTCCTCCTGGTTGGCCGAAGTTGGCAGGCTGTCGACGCTGTGCGGGTGCGACAAAGCCTTGTTCTCGCTGGCCAGGGCGGCAGCGGTGACCTGGGCGATCATGAAGCCGGAGTTGACCCCACCGTTTTCCACCAGGAACGGCGGCAGCTGGGACATGTGCTTGTCCATCATCAGCGAGATGCGGCGTTCGCTGAGCGAGCCGATTTCG  >  AE015451/5734397‑5734623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.