New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5784485	91 (1.060)	7 (0.090)	6/328	NT	7.7%	coding (2960/3309 nt)	kefA	mechanosensitive channel protein, intermediate (smaller, MscS‑like) conductance, K+ efflux
	?	AE015451	= 5784471	85 (1.070)					coding (2946/3309 nt)	kefA	mechanosensitive channel protein, intermediate (smaller, MscS‑like) conductance, K+ efflux

GATCCTGTTCGAGCGCCCGGTACGGATTGGCGACACCATCACCATCGGCAACCTGTCGGGCACGGTAAGCAAGATCCGCATCCGCGCCACCACCATCACCGACTTCGACCGCAAGGACATCATCGTCCCCAACAAGACCTTCATCACTGGCCAACTGATCAACTGGTCGCTGACCGACACGGTCACCCGGGTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5784291‑5784485 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcacccgggtgacCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATGATGTCCTTGCGGTCGAAGTCGGTGATGGTGGTGGCGCGGATGCGGATCTTGCTTACCGTGCCCGACAGGTTGCCGATGGTGATGGTGTCGCCAATCCGTACCGGGCGCTCGAACAGGATCATGATGCCGGAGATGAAGTTGGCGAAGATTTCCTGCATGCCGAA  <  AE015451/5784471‑5784247                                                                                                                                                                                                                                                                                                                                                                                                                                      GATCCTGTTCGAGCGCCCGGTACGGATTGGCGACACCATCACCATCGGCAACCTGTCGGGCACGGTAAGCAAGATCCGCAGCCGCGCCACCACCATCACCGACTTCGACCGCAAGGACATCATCGTCCCCAACAAGACCTTCATCACTGGCCAACTGATCAACTGGTCGCTGACCGACACGGTCAC                                                                                                                                                                                                                                            <  2:94870/186‑1           GAGCGCCCGGTACGGATTGGCGACACCATCACCATCGGCAACCTGTCGGGCACGGTAAGCAAGATCCGCATCCGCGCCACCACCATCACCGACTTCGACCGCAAGGACATCATCGTCCCCAACAAGACCTTCATCACTGGCCAACTGATCAACTGGCCGCTTACCGACCCCGTCCCCCGGGc                                                                                                                                                                                                                                      >  2:315576/1‑181                   GGTACGGATTGGCGACACCATCACCATCGGCAACCTGTCGGGCACGGTAAGCAAGATCCGCATCCGCGCCACCACCATCACCGACTTCGACCGCAAGGACATCATCGTCCCCAACAAGACCTTCATCACTGGCCAACTGATCAACTGGTCGCTGACCGACACGGTCACCCGGGTGACCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACt                                                                                                                                                                         >  1:958657/1‑234                                                                        AGATCCGCATCCGCGCCACCACCATCACCGACTTCGACCGCAAGGACATCATCGTCCCCAACAAGACCTTCATCACTGGCCAACTGATCAACTGGTCGCTGACCGACACGGTCACCCGGGTGACCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATGATGTCCTTGCGGTCGAAGTCGGTGATGGTGGTGGCGCG                                                                                                                                <  1:1293569/223‑1                                                                                                                                            TTCATCACTGGCCAACTGATCAACTGGTCGCTGACCGACACGGTCACCCGGGTGACCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATGATGTCCTTGCGGTCGAAGTCGGTGATGGTGGTGGCGCGGATGCGGATCTTGCTTACCGTGCCCGACTGGCTGCCGATGG                                                                                       >  2:958655/1‑196                                                                                                                                                                         ccgGACCGACCCGGTCACCCGGGTGACCGTGTCGGTCAGTGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTT                                                                                                                                                                                   <  1:1389591/72‑1                                                                                                                                                                         GCTGACCGACACGGTCACCCGGGTGACCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATGATGTCCTTGCGGTCGAAGTCGGTGATGGTGGTGGCGCGGATGCGGATCTTGCTTACCGTGCCCGACAGGTTGCCGATGGTGATGGTGTCGCC                                                                          >  2:1096650/1‑180                                                                                                                                                                           TGACCGACACGGTCACCCGGGTGACCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATGATGTCCTTGCGGTCGAAGTCGGTGATGGTGGTGGCGCGGATGCGGATCTTGCTTACCGTGCCCGACAGGTTGCCGATGGTGATGGTGTCGCCAATCC                                                                     >  1:322360/1‑183                                                                                                                                                                                GACACGGTCACCCGGGTGCCCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATG                                                                                                                                                                      <  1:969108/81‑1                                                                                                                                                                                             GGGTGACCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATGATGTCCTTGCGGTCGAAGTCGGTGATGGTGGTGGCGCGGATGCGGATCTTGCTTACCGTGCCCGACAGGTTGCCGATGGTGATGGTGTCGCCAATCCGTACCGGGCGCTCGAACAGGATCATGATGCCGGAGATGAAGTTGGCGAAGATTTCCTGCATGCCGAA  <  1:804468/232‑1                                                                                                                                                                                                TGACCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATGATGTCCTTGCGGTCGAAGTCGGTGATGGTGGTGGCGCGGATGCGGATCTTGCTTACCGTGCCCGACAGGTTGCCGATGGTGATGGTGTCGCCAATCCGTACCGGGCGCTCGAACAGGATCATGATGCCGGAGATGAAGTTGGCGAA                    <  1:1466088/211‑1                                                                                                                                                                                                                                                                                                                                                                                                                                      GATCCTGTTCGAGCGCCCGGTACGGATTGGCGACACCATCACCATCGGCAACCTGTCGGGCACGGTAAGCAAGATCCGCATCCGCGCCACCACCATCACCGACTTCGACCGCAAGGACATCATCGTCCCCAACAAGACCTTCATCACTGGCCAACTGATCAACTGGTCGCTGACCGACACGGTCACCCGGGTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5784291‑5784485 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcacccgggtgacCGTGTCGGTCAGCGACCAGTTGATCAGTTGGCCAGTGATGAAGGTCTTGTTGGGGACGATGATGTCCTTGCGGTCGAAGTCGGTGATGGTGGTGGCGCGGATGCGGATCTTGCTTACCGTGCCCGACAGGTTGCCGATGGTGATGGTGTCGCCAATCCGTACCGGGCGCTCGAACAGGATCATGATGCCGGAGATGAAGTTGGCGAAGATTTCCTGCATGCCGAA  <  AE015451/5784471‑5784247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.