New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 6112813	86 (1.000)	4 (0.050)	4/338	NT	4.7%	intergenic (‑69/‑58)	PP_5363/clsA	conserved exported protein of unknown function/Cardiolipin synthase 1
	?	AE015451	= 6112818	82 (1.000)					intergenic (‑74/‑53)	PP_5363/clsA	conserved exported protein of unknown function/Cardiolipin synthase 1
Rejected: Frequency below/above cutoff threshold.

TGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGACGAACGCTCCTGGAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6112639‑6112813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgcctgcAACCCGCAGGCGGATTTGGCGTCTAAGGCTCAGTCCGGCCCGTTTGACCGGCTTTTTTCCAGGAGCGTTCGTCCATGAAGATTCGTCTGCCACTGTTGGCGTTGGCCCTAGGCATGAGCAGTCCACTGGTACAAGCCCAGATGCTGCAACCGGGGTTGTGGGAGCTGACCACCAGCAACAT  <  AE015451/6112818‑6112638                                                                                                                                                                                                                                                                                                                                                                      TGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGACGAACGCTCCTGGAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCGC                                                                                                                                                                                           <  2:1005968/171‑1       TGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGACGAACGCTCCTGGAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCGCCTGC                                                                                                                                                                                       >  2:218494/1‑169            GTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTTGCAGACGAATCTTCATGGACGAACGCTCCTGGAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCGCCTGC                                                                                                                                                                                       >  2:1417470/1‑164                                                                  ATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGACGAACGCTCCTGGAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCG                                                                                                                                                                                            >  1:1386678/1‑105                                                                                   CAACAGTGGCAGACGAATCTTCATGGACGAACGCTCCTGGAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCGCCTGCAACCCGCAGGCGGATTTGGCGTCTAAGGCTCAGTCCGGCCCGTTTGACCGGCT                                                                                                                                  >  2:608931/1‑146                                                                                                                AACGCTCCTGGAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCGCCTGCAACCCGCAGGCGGATTTGGCGTCTAAGGCTCAGTCCGGCCCGCTTGACCGGCTTTTTTCCAGGAGCGTTCGTCCATGAAGATTCGTCTGCC                                                                                            >  1:1110037/1‑155                                                                                                                          GAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCGCCTGCAACCCGCAGGCGGATTTGGCGTCTAAGGCTCCGTCCGGCCCGTCTGACCGGCTTTTTTCCCGGCGCGGTCGTCCATGAAGCTGCGT                                                                                                 >  2:120458/1‑140                                                                                                                                                                CGCCAAATCCGCCTGCAACCCGCAGGCGGCTTTTGCGTCTAAGGCTCAGTCCGGCCCGTTTGACCGGC                                                                                                                                   >  2:410958/1‑68                                                                                                                                                                              GCAACCCGCAGGCGGATTTGGCGTCTAAGGCTCAGTCCGGCCCGTTTGACCGGCTTTTTTCCAGGAGCGTTCGTCCATGAAGATTCGTCTGCCACTGTTGGCGTTGGCCCTAGGCATGAGCAGTCCACTGGTACAAGACCAGATGCTGCAACCGGG                             >  2:413777/1‑156                                                                                                                                                                               CAACCCGCAGGCGGATTTGGCGTCTAAGGCTCAGTCCGGCCCGTTTGACCGGCTTTTTTCCAGGAGCGTTCGTCCATGAAGATTCGTCTGCCACTGTTGGCGTTGGCCCTAGGCATGAGCAGTCCACTGGTACAAGCCCAGCTGCTGCAACCGGGGTTGTGGGCGCTGCCCACCAGCAACAT  >  2:458304/1‑182                                                                                                                                                                                                                                                                                                                                                                      TGTTGCTGGTGGTCAGCTCCCACAACCCCGGTTGCAGCATCTGGGCTTGTACCAGTGGACTGCTCATGCCTAGGGCCAACGCCAACAGTGGCAGACGAATCTTCATGGACGAACGCTCCTGGAAAAAAGCCGGTCAAACGGGCCGGACTGAGCCTTAGACGCCAAATCCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6112639‑6112813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgcctgcAACCCGCAGGCGGATTTGGCGTCTAAGGCTCAGTCCGGCCCGTTTGACCGGCTTTTTTCCAGGAGCGTTCGTCCATGAAGATTCGTCTGCCACTGTTGGCGTTGGCCCTAGGCATGAGCAGTCCACTGGTACAAGCCCAGATGCTGCAACCGGGGTTGTGGGAGCTGACCACCAGCAACAT  <  AE015451/6112818‑6112638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.