New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4933879	63 (0.730)	14 (0.180)	13/324	NT	19.5%	coding (570/1308 nt)	flhF	Flagellar biosynthesis protein FlhF
	?	AE015451	= 4933863	58 (0.740)					coding (586/1308 nt)	flhF	Flagellar biosynthesis protein FlhF

CAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCGGCGCAGCAGCCGGTACGGCGGCGGCC  >  AE015451/4933645‑4934113                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           cAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGcgcg                                                                                                                                                                                                                                           >  1:1223055/1‑236 (MQ=255) cAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGcgcg                                                                                                                                                                                                                                           >  1:1419844/1‑236 (MQ=255)   gggTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCgg                                                                                                                                                                                                                                          >  1:856814/1‑235 (MQ=255)            gCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTc                                                                                                                                                                                                                                    >  1:957219/1‑232 (MQ=255)                   cTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTcgg                                                                                                                                                                                                                            <  2:1024080/233‑1 (MQ=255)                             aTACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGcgcg                                                                                                                                                                                                                                           >  2:636181/1‑208 (MQ=255)                             aTACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCca                                                                                                                                                                                                                >  1:608754/1‑235 (MQ=255)                                           cATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttg                                                                                                                                                                                                                          <  2:1420765‑M1/211‑19 (MQ=255)                                           cATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGAt                                                                                                                                                                                                                                 >  1:481156/1‑204 (MQ=255)                                                      gcgcCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGc                                                                                                                                                                                                   >  1:71448/1‑223 (MQ=255)                                                      gcgcCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGa                                                                                                                                                                                       >  1:586520/1‑235 (MQ=255)                                                      gcgcCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGa                                                                                                                                                                                       >  1:1327897/1‑235 (MQ=255)                                                          cAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcact                                                                                                                                                                                                                            <  2:1263093‑M1/194‑17 (MQ=255)                                                          cAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAgg                                                                                                                                                                                   <  1:980439/235‑1 (MQ=255)                                                            ggTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGt                                                                                                                                                                                                                        >  1:1125482/1‑196 (MQ=255)                                                               tCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcact                                                                                                                                                                                                                            >  2:876034‑M1/1‑173 (MQ=255)                                                                 tGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGcc                                                                                                                                                                                 <  2:1280371/230‑1 (MQ=255)                                                                           aCTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGCCAGGCCGATGCGCTGc                                                                                                                                                                       >  1:827706/1‑230 (MQ=255)                                                                                       aGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCTGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCggg                                                                                                                                                                                                    <  2:1186191/189‑1 (MQ=255)                                                                                       aGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGa                                                                                                                                                                                                                                  >  1:743514/1‑159 (MQ=255)                                                                                         cgcgcgGCCAGCTTGGCCCGGGTGTTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCg                                                                                                                                                                                <  2:494431/207‑1 (MQ=255)                                                                                                        gCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTtgct                                                                                                                                    <  1:1310848/236‑1 (MQ=255)                                                                                                             ggtggtggtCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTtgct                                                                                                                                    <  2:856812/231‑1 (MQ=255)                                                                                                                    gtCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCCTGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCaa                                                                                                                                                           <  2:1038116/201‑1 (MQ=255)                                                                                                                         gCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTc                                                                                                                                                                                                                  <  2:1185061/141‑1 (MQ=255)                                                                                                                          cccATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTcgcgc                                                                                                                                                                                                     >  2:506094/1‑152 (MQ=255)                                                                                                                          cccATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTcc                                                                                                                   >  1:735282/1‑235 (MQ=255)                                                                                                                            cATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAgg                                                                                                                >  1:991429/1‑236 (MQ=255)                                                                                                                             aTGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGAtc                                                                                                                                                                                                                                <  1:1219650/123‑1 (MQ=255)                                                                                                                                 ccgccgGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATgcgc                                                                                                                                                                          >  2:1220355/1‑173 (MQ=255)                                                                                                                                 ccgccgGGCCGACCATGGCGATCACCCCACCCTCTTCGAGCGGCTCGATTTCAGGCACTTCGAGCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGc                                                                                                                                                                       <  2:250161/176‑1 (MQ=255)                                                                                                                                       ggCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAAcc                                                                                                      >  1:872050/1‑235 (MQ=255)                                                                                                                                            aCCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGtt                                                                                                 >  1:898953/1‑235 (MQ=255)                                                                                                                                             ccATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtg                                                                                                                                                                                                        <  1:853086‑M1/131‑37 (MQ=255)                                                                                                                                              cATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaat                                                                                                                                                                                                <  2:972203‑M1/138‑45 (MQ=255)                                                                                                                                                tGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACt                                                                                            >  1:557911/1‑236 (MQ=255)                                                                                                                                                         ccccacccTCTTCGATCGGCTCGATTTCAGGCACTTCGGTCATCCGTGCCAAGTGCGCCGGCAGCATACGCCACGCCGGGCGCgtgctgctggccc                                                                                                                                                                                                                               >  2:1031706‑M1/1‑83 (MQ=255)                                                                                                                                                         ccccacccTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCcagcag                                                                                    >  1:1295046/1‑235 (MQ=255)                                                                                                                                                          cccacccTCTTCGATCGGCTCGATTTCAGGCGCTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGGCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGGTgcg                                                                                                                                                                           >  1:427036/1‑147 (MQ=255)                                                                                                                                                           ccgcccTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGAtct                                                                                                                                                                                                                               <  2:21129/91‑1 (MQ=255)                                                                                                                                                            cacccTCTTCGACCGGCTCGATTTCAGCCCCTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTcg                                                                                <  1:292423/236‑1 (MQ=255)                                                                                                                                                               ccTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTtgctg                                                                                                                                   >  1:607259/1‑182 (MQ=255)                                                                                                                                                               ccTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAAcc                                                                                                      >  2:894848/1‑211 (MQ=255)                                                                                                                                                                      gATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGccc                                                                       >  1:1164244/1‑235 (MQ=255)                                                                                                                                                                         cGGCTCGATTTCAGGCACGTCGATCATCCGTGCCAAGTGGGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCa                                                                                                                            <  2:647185/179‑1 (MQ=255)                                                                                                                                                                           gCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATgcg                                                                                                                                                                           >  2:806361/1‑130 (MQ=255)                                                                                                                                                                            cTCGATTTCAGGGACTTCGATCATCCGTGCGAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatc                                                                                                                                                                                      <  2:1341333‑M1/118‑55 (MQ=255)                                                                                                                                                                              cGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGGCCGGGCCagcagcccccg                                                                                                                                                                                                      >  2:230799/1‑95 (MQ=255)                                                                                                                                                                               gATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgctcgaagagggtggggtggtcgccatggtcggc                                                                                                                                                        >  1:1263727‑M1/1‑61 (MQ=255)                                                                                                                                                                               gATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCg                                                                                                                                           >  1:320220/1‑158 (MQ=255)                                                                                                                                                                               gATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGGCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGGCAAAGGGTGGGCtgctgccg                                                                                                                                          >  1:180998/1‑157 (MQ=255)                                                                                                                                                                                  ttCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAgc                                                          <  2:735280/236‑1 (MQ=255)                                                                                                                                                                                  ttCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAgc                                                          <  1:1060785/236‑1 (MQ=255)                                                                                                                                                                                         aCTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCCTCGATCTCGGCGGTCAGGGCcagcc                                                                                                                                                                                                             >  2:160397/1‑81 (MQ=255)                                                                                                                                                                                            tCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAg                                                                           <  2:608752/209‑1 (MQ=255)                                                                                                                                                                                             cgctcatcggtGCCAAGGGAGCCAGCAGCAGGCGCCAGGCCTGGCGCatgctgctggctcacttggcgcggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggg                                                                                                                                                                          <  2:1012362‑M1/110‑67 (MQ=255)                                                                                                                                                                                              gATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGTCCTGGCGCgg                                                                                                                                                                                                                                          >  2:399325/1‑48 (MQ=255)                                                                                                                                                                                              gATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAg                                                           >  1:1380760/1‑223 (MQ=255)                                                                                                                                                                                               atcatcCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATc                                                <  2:991427/233‑1 (MQ=255)                                                                                                                                                                                                   tcCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTcg                                                                                <  2:1223052/197‑1 (MQ=255)                                                                                                                                                                                                        gCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgctacgtgctcaagtacggcgcgcagaacctggcgctggtgagcatggacagcttccgtatcggcgctc                                     >  1:1403229‑M1/1‑36 (MQ=255)                                                                                                                                                                                                        gCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCg                                                              >  1:738663/1‑210 (MQ=255)                                                                                                                                                                                                        gCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTgg                                    >  1:583092/1‑236 (MQ=255)                                                                                                                                                                                                         ccAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATg                                                     <  2:738661/218‑1 (MQ=255)                                                                                                                                                                                                          cAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgttggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaggaccaccaccctggcc                                                                                                                       >  1:1044338‑M1/1‑34 (MQ=255)                                                                                                                                                                                                          cAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgctacgtgctcaagtacggcgcgcagaacctggcgctggtgagcatg                                                           <  1:1420768‑M1/211‑178 (MQ=255)                                                                                                                                                                                                          cAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgctacgtgctcaagtacggcgcgca                                                                                 >  1:876036‑M1/1‑34 (MQ=255)                                                                                                                                                                                                          cAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTggg                                   >  1:108450/1‑235 (MQ=255)                                                                                                                                                                                                          cAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTg                                     >  1:713388/1‑233 (MQ=255)                                                                                                                                                                                                                aGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTccg                                                                                                                                                                                                                     >  2:433675/1‑49 (MQ=255)                                                                                                                                                                                                                aGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCg                            <  1:1220358/236‑1 (MQ=255)                                                                                                                                                                                                                 gCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAAcc                             <  2:887337/234‑1 (MQ=255)                                                                                                                                                                                                                 gCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCg                            >  1:887339/1‑235 (MQ=255)                                                                                                                                                                                                                  ccAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacg                                                                                                                                                                                                                     >  2:627610‑M1/1‑26 (MQ=255)                                                                                                                                                                                                                  ccAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATc                                                <  1:266554/214‑1 (MQ=255)                                                                                                                                                                                                                   cagcagCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAgc                                                          <  2:530452/203‑1 (MQ=255)                                                                                                                                                                                                                     gcagcaTGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTtg                                                                                                                                      >  1:1268849/1‑125 (MQ=255)                                                                                                                                                                                                                         caTGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCCGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCGGCgcagca                    >  1:1500151/1‑235 (MQ=255)                                                                                                                                                                                                                             cgcCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaaggccaccac                                                                                                                              >  2:244497‑M1/1‑15 (MQ=255)                                                                                                                                                                                                                             cgcCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACtt                                                                                           <  2:586518/160‑1 (MQ=255)                                                                                                                                                                                                                              gcCAGGCCTGGCGAatgctgctggctcacttggcacggatgagcgaagtgcctgaaagcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgctacgtgctcaagtacggcgcgcagaacctggcgctggtgagcatggacagcttccgtatcggcgctcaggaacagctcaagaccc                   <  1:475378‑M1/231‑218 (MQ=255)                                                                                                                                                                                                                                   gCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgctac                                                                                                     <  1:826311‑M1/144‑136 (MQ=255)                                                                                                                                                                                                                                   gCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggcaaagctggccgcgcgctacgtgctcaagta                                                                                          >  2:500425‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                                     cTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATc                                                <  2:1466145/195‑1 (MQ=255)                                                                                                                                                                                                                                      tGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGGGTGGGTCAACCgg                           >  1:965249/1‑215 (MQ=255)                                                                                                                                                                                                                                      tGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCGGCGCAGCAGCCGGTAcggcgg       >  1:940586/1‑235 (MQ=255)                                                                                                                                                                                                                                          gcatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgct                                                                                                       >  2:417686‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                           cgGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCGGCGCAGCAGCCGGTACGGCGGCGGcc  >  1:1000611/1‑235 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           CAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCGGCGCAGCAGCCGGTACGGCGGCGGCC  >  AE015451/4933645‑4934113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.