Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	3460960	3461096	137	30 [29]	[25] 30	PP_3076	putative ABC transporter permease protein

CGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCT  >  AE015451/3460745‑3461026                                                                                                                                                                                                                       |                                                                    cgcCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGcc                                                 <  1:974799/235‑1 (MQ=255)   ccATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCa                                                <  2:513426/234‑1 (MQ=255)     aTGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCAc                                            <  1:33442/236‑1 (MQ=255)                    caccaGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGgtc                             <  2:1038674/236‑1 (MQ=255)                               cGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTa                  <  1:1392071/236‑1 (MQ=255)                                               cTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  1:1110402/236‑1 (MQ=255)                                                tGAGGATGATCTACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  1:1411857/235‑1 (MQ=255)                                                tGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  1:1501115/235‑1 (MQ=255)                                                tGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  1:772598/235‑1 (MQ=255)                                                tGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  1:806129/235‑1 (MQ=255)                                                 gAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  2:1417876/234‑1 (MQ=255)                                                  aGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  2:651385/233‑1 (MQ=255)                                                      ggaccaccAGATCCACCACTGGCACCCCCGCCCATCCTTCCAGCAAGCGCTGGCCGACCAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCcgcg                                                                     <  2:320652/155‑1 (MQ=255)                                                                       acTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  2:1212290/212‑1 (MQ=255)                                                                              aCCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCAccc                                                      >  2:1372328/1‑153 (MQ=255)                                                                              aCCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCAccc                                                      <  1:1372331/153‑1 (MQ=255)                                                                                       aTACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  >  1:1160355/1‑196 (MQ=255)                                                                                       aTACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  2:1160352/196‑1 (MQ=255)                                                                                              cggCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCgg                        <  1:244297/165‑1 (MQ=255)                                                                                                                 aGGTCGCCCCAGCCCCCGGGGTAGCCGTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAg                 <  2:193184/155‑1 (MQ=255)                                                                                                                      tccccAGCCCCCGTTGTCGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  1:454156/163‑1 (MQ=255)                                                                                                                         ccAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGgtc                             <  2:277101/135‑1 (MQ=255)                                                                                                                                                                                  cACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  2:1122774/105‑1 (MQ=255)                                                                                                                                                                                   aCGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCAcc                                                       >  2:287207/1‑51 (MQ=255)                                                                                                                                                                                             cAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCgcgc                                                  <  1:814651/46‑1 (MQ=255)                                                                                                                                                                                             cAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCgcgc                                                  >  2:814649/1‑46 (MQ=255)                                                                                                                                                                                               aaGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGcc                                                 <  2:1213331/45‑1 (MQ=255)                                                                                                                                                                                               aaGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGcc                                                 >  1:1213334/1‑45 (MQ=255)                                                                                                                                                                                                   cGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  <  2:1217839/88‑1 (MQ=255)                                                                                                                                                                                                   cGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCt  >  1:1217842/1‑88 (MQ=255)                                                                                                                                                                                                                       |                                                                    CGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCGCCCGCCGCCACGCCAATGAGCACACTGACCACGGTCAGGGCAAAGGCGAACAGCAGCGATACCCGCGTGCCATAAAGCACCCGCGCCAGCACGTCACGGCCTTGGTCGTCGGTGCCTAGCCAGTTGCTGGCGCT  >  AE015451/3460745‑3461026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑