Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5816937	5817226	290	30 [29]	[27] 30	[pilT]	[pilT]

GCCCCTCCCGAACCAGGTTACGCACCGCCGGCGTCGCCACCAGCACTTCCCGCGCCGCCACCCGCCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGG  >  AE015451/5817053‑5817462                                                                                                                                                                               |                                                                                                                                                                                                                                            gCCCCTCCCGAACCAGGTTACGCACCGCCGGCGTCGCCACCAGCACTTCCCGCGCCGCCACCCGCCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCg                                                                                                                                                                                >  1:315429/1‑236 (MQ=255)                   tACGCACCGCCGGCGTCGCCACCAGCACTTCCCGCGCCGCCACCCGCCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAg                                                                                                                                                               >  1:1291975/1‑235 (MQ=255)                              ggCGTCGCCACCAGCACTTCCCGCGCCGCCACCCGCCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCa                                                                                                                                                                                              >  2:1483713/1‑193 (MQ=255)                                                                                     ccAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTcag                                                                                                                >  1:517008/1‑214 (MQ=255)                                                                                     ccAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGGTTCCAGGTcgc                                                                                                                                           >  1:473375/1‑189 (MQ=255)                                                                                      cAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTg                                                                                            <  1:1483716/235‑1 (MQ=255)                                                                                                 cgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGGTTCGGCCgcgcgc                                                                                                                                                                       >  2:1194296/1‑149 (MQ=255)                                                                                                      accaGGCGCAGCGACTCTGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGAAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTg                                                                                            >  1:661020/1‑219 (MQ=255)                                                                                                      accaGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCACCCTGTCGATGCTGCTGGTCGCCGAAc                                                                                                                                                                                                                      >  2:1320507/1‑97 (MQ=255)                                                                                                      accaGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCCCGGTTGCCAGCACCAGGCGCCGGGTTTCGGCCGCGCGCAGGGCCCGGCg                                                                                                                                                            >  2:327756/1‑155 (MQ=255)                                                                                                      accaGGCGCAGCGACTCGGCCAGCATCCCCCGCACCAACGGCTTTTCCTCGTCCGCAAACACCTACGCCAACCCGTCGCTcctgct                                                                                                                                                                                                                                 >  2:1244106/1‑86 (MQ=255)                                                                                                            cgcAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCgg                                                                                                               >  2:1369180/1‑194 (MQ=255)                                                                                                                 cGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGa                                                                    >  2:1083487/1‑232 (MQ=255)                                                                                                                 cGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACt                                                                  >  1:953813/1‑234 (MQ=255)                                                                                                                  gACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCgg                                                                                                                                                                               >  2:888160/1‑124 (MQ=255)                                                                                                                  gACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTcc                                                                                                                 >  2:892203/1‑186 (MQ=255)                                                                                                                   aCTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCaa                                                                                                                                       >  1:1523101/1‑163 (MQ=255)                                                                                                                        gCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGgcgcag                                                                                                   >  2:755574/1‑194 (MQ=255)                                                                                                                                     gCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTgg                                            >  1:716438/1‑236 (MQ=255)                                                                                                                                     gCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTg                                             >  1:871117/1‑235 (MQ=255)                                                                                                                                          aaCGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGAc                                       >  1:1356970/1‑236 (MQ=255)                                                                                                                                            cGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGAcc                                      <  1:1083490/235‑1 (MQ=255)                                                                                                                                             ggCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGCGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCACCTCGCCGATCATGATCACGTCCGGGTCCAGGCGCAGCGCACTGCGCAGCCCCTg                                                                                 >  1:286964/1‑191 (MQ=255)                                                                                                                                               cTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAg                                    >  1:1406491/1‑234 (MQ=255)                                                                                                                                                         gcagcaAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCa                                     >  1:1331531/1‑223 (MQ=255)                                                                                                                                                                acacCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATg                  >  2:789897/1‑235 (MQ=255)                                                                                                                                                                       caccaACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGAtct          >  1:841931/1‑236 (MQ=255)                                                                                                                                                                               tGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCAtc                                                     <  2:946932/185‑1 (MQ=255)                                                                                                                                                                               tGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCAtc                                                     >  1:946934/1‑185 (MQ=255)                                                                                                                                                                               tGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAggg  >  1:1181185/1‑236 (MQ=255)                                                                                                                                                                               |                                                                                                                                                                                                                                            GCCCCTCCCGAACCAGGTTACGCACCGCCGGCGTCGCCACCAGCACTTCCCGCGCCGCCACCCGCCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGG  >  AE015451/5817053‑5817462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑