| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 2,256,285 | T→C | 8.3% | intergenic (+345/‑359) | asd → / → PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 2,256,285 | 0 | T | C | 8.3% | 231.6 / 10.3 | 72 | intergenic (+345/‑359) | asd/PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| Reads supporting (aligned to +/- strand): ref base T (40/26); new base C (3/3); total (43/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-02 | |||||||||||
TTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCACGATGGCGACACA > AE015451/2256053‑2256510 | tttAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAgc > 1:528958/1‑236 (MQ=255)tttAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAgc < 1:239959/236‑1 (MQ=255) ttAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAgc > 1:1453553/1‑235 (MQ=255) ggCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGGACCCCGGAGcgcagcgcag < 1:566705/235‑1 (MQ=17) tGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCgg > 2:1038667/1‑234 (MQ=255) tGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGgat > 1:521632/1‑236 (MQ=255) cTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAgc < 1:27013/220‑1 (MQ=255) cgttgccgttgcTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGcgcag < 2:1495163/225‑5 (MQ=255) cgttgccgttgcTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGGTTTTGGtt > 1:429861/1‑236 (MQ=255) ttgcttttgcttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGGCCCCGGGGCGTAGCGCCGGGGCCGgag > 2:147873/1‑203 (MQ=255) ttgcttttgcttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCtttt > 2:639650/1‑234 (MQ=40) ttgcttCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGGCCGGAGCGAGGGGACCCCGGAGCGCAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCttttt < 2:103089/223‑1 (MQ=16) gcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCg > 2:94547/1‑187 (MQ=35) tAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGTGCTG‑AGCCCCAGGATGGGGCCTGCAGCGC‑GTGCTCCCGGGAGCAAGGCCGGAGCGAGGGGACCCCGGAGCGCAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCttttt > 1:1421918/1‑215 (MQ=11) tAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGGCCGGAGCGAGGGGACCCCGGAGCGCAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGAcc > 1:1034875/1‑235 (MQ=255) tAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGC‑GTGCTCCCGGGAGCAAGGCCGGAGCGAGGGGACCCCGGAGCGCAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACccg > 1:1078278/1‑236 (MQ=255) tAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGCCCCAGGATGGGGCCTGCAGCGC‑GTGCTCCCGGGAGCAAGGCCGGAGCGAGGGGACCCCGGAGCGCAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCttttt < 2:1421915/215‑1 (MQ=11) aaGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTg < 2:1272253/216‑1 (MQ=255) cgGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAg > 1:1034099/1‑236 (MQ=255) aGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTa > 2:499729/1‑225 (MQ=255) gCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCa < 2:1160650/201‑1 (MQ=255) aCGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGAc > 1:222888/1‑236 (MQ=255) gCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGAcc > 1:474475/1‑200 (MQ=255) aGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGCCGGTTTTTGGTTCCTTTTTGCCAc > 2:335237/1‑195 (MQ=255) gATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATgc > 1:172438/1‑236 (MQ=255) cAGGGGGCCGGGCGCCGGGCGTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCACGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGc < 2:357784/180‑1 (MQ=255) cgcAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATAc < 2:890825/234‑1 (MQ=255) cAGGCCTTGCGGAGGCAGGTGACGGGCATCCATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTAt < 2:1417677/209‑1 (MQ=255) gggCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGt < 2:1323854/201‑1 (MQ=255) ggCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGGTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAg < 2:1019609/111‑1 (MQ=17) gagggaggTGACGGGCATGGGTGCCCGTCAAGCGCGG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGtga < 1:1178678/213‑1 (MQ=255) gACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCCAGGGGACCCCGGAGCGTAGCGCCGGGGCCGGATGATGGGAGCCGACGGTCTTGGGTTcc > 2:173079/1‑139 (MQ=255) cGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCcacct > 2:1145669/1‑231 (MQ=255) gggCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAgg < 2:523208/179‑1 (MQ=255) gCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACaaaa > 1:1392700/1‑151 (MQ=255) aTGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCcaaga > 2:588114/1‑234 (MQ=255) aTGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCcaag > 1:773212/1‑233 (MQ=255) ccGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCcaagaagcaagaag < 1:18967/235‑1 (MQ=255) tCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGAc > 2:1511020/1‑134 (MQ=255) aGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGtga < 1:1414231/183‑1 (MQ=255) cccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGtga > 1:432818/1‑173 (MQ=255) cTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCg > 1:1308213/1‑235 (MQ=255) gCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATAcc > 2:535617/1‑167 (MQ=255) aGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGccc < 1:1270040/183‑1 (MQ=255) aGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAAt > 2:661636/1‑228 (MQ=255) gcgcGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGCGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGGGACTATGCGCCACCTGCGTGAATGAATa > 1:479569/1‑162 (MQ=255) gcgcGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGc < 1:1497344/126‑1 (MQ=255) gcgcGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGCATGAATACCTACTCGGTGTGAAt > 2:156584/1‑178 (MQ=255) gcgcGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCcaagaagcaa > 1:1102117/1‑197 (MQ=255) gcgGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGCCCCGCCGTAAGGGCGGAAAGGTGACTATgcgc < 1:1038670/142‑1 (MQ=255) gTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGa < 1:1402691/235‑1 (MQ=255) tcctccCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATc > 2:1330259/1‑181 (MQ=255) tcctccCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCcaagaagcaagaagcaagaa > 2:664617/1‑201 (MQ=255) tcctccCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCcaagaagcaaga > 2:1109389/1‑193 (MQ=255) ccGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAAt < 2:1183841/167‑1 (MQ=255) ccGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGc < 1:588116/235‑1 (MQ=255) gggAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGgtg < 1:1425380/160‑1 (MQ=255) ggAGCAGGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGAc < 2:660142/89‑1 (MQ=255) ggAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAAc > 1:1416082/1‑236 (MQ=255) gcgaGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAAc < 2:943484/230‑1 (MQ=255) aaGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCcaagaagcaagaagcaagaagcaagaagca > 1:31581/1‑198 (MQ=255) aaGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAgaagcaagaagaaagacgcaagaagcaagaagcaac > 2:430092/1‑206 (MQ=255) gccGGGGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGAGGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGccc < 2:52534/159‑1 (MQ=255) cGGGGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGGGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGCCccgc < 2:74298/93‑1 (MQ=255) cGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGtga > 2:1221202/1‑131 (MQ=255) cGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCACg > 2:516299/1‑233 (MQ=255) aGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCACGAt < 1:1004865/233‑1 (MQ=255) ggACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAAtt < 2:1033718/194‑1 (MQ=255) gACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGACTGTTTGGa > 2:212650/1‑205 (MQ=255) ccccGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCACGATGGCGacac > 1:1293826/1‑235 (MQ=255) cGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCcaagaagcaagaagcaagaagcaagaagcaa > 2:691111/1‑178 (MQ=255) cGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCACGATGGc > 2:1336218/1‑227 (MQ=255) cGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCACGATGGCGAcaca > 2:521305/1‑233 (MQ=255) | TTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGAATGCCCACATCCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCACGATGGCGACACA > AE015451/2256053‑2256510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |