| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 201,340 | C→T | 5.3% | T2282T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 201,340 | 0 | C | T | 5.3% | 303.0 / 5.6 | 93 | T2282T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (37/51); new base T (2/3); total (39/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.23e-01 | |||||||||||
CCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCGTT > AE015451/201114‑201561 | ccAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGc < 1:345127/235‑1 (MQ=255) cAACAGCACCACGGACTCGGCCACTGAAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGAACCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAg > 2:925611/1‑233 (MQ=255) aGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGaa < 1:949879/236‑1 (MQ=12) accacGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACg < 2:764300/235‑1 (MQ=255) cGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCaa < 1:824107/235‑1 (MQ=255) tgCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAAcc < 2:1037401/235‑1 (MQ=255) ggCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAAcc < 1:854561/236‑1 (MQ=255) gCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTc < 1:315583/230‑1 (MQ=255) ggCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAGCCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCt < 1:33209/236‑1 (MQ=255) ggCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCt < 1:390068/236‑1 (MQ=255) gCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCtt > 1:546061/1‑236 (MQ=255) ccACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCt < 2:1127987/234‑1 (MQ=255) aCTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGc < 1:956588/212‑1 (MQ=39) aCTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGc > 2:956586/1‑212 (MQ=255) aCTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAGCCAACCTTCAc > 1:627861/1‑236 (MQ=255) cAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTc < 1:389360/218‑1 (MQ=40) aGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTc < 2:1417551/208‑1 (MQ=18) tCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGc < 1:1156109/231‑1 (MQ=255) ccTAGGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGc < 1:1010541/230‑1 (MQ=255) cTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGt > 2:1222020/1‑198 (MQ=38) tATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGAcg > 2:972961/1‑206 (MQ=40) ctgCACTAATGCGCCGGTGGTCAATTCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGc < 1:105491/229‑1 (MQ=255) cTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCAc > 2:571726/1‑202 (MQ=40) cTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACtg > 2:1438711/1‑204 (MQ=40) aTGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTc < 1:72850/185‑1 (MQ=34) cgcCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACGAAGGTCACCGACGAGCCAGGCACGCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTc < 1:1479381/206‑1 (MQ=255) cgcCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACtgt < 1:465557/199‑1 (MQ=38) gtggtCAAGGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCAGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCt < 1:654106/236‑1 (MQ=255) tggtCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACCCCAGGCAACGAAGGCGACTTGGTCAAGGTCACCATCACAGCCGACCAGACCTCGGTGGCTGAGAACGTCAAAcc > 2:112256/1‑181 (MQ=11) gtCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGACGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCgag > 2:8355/1‑168 (MQ=18) cgCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCAc < 2:409978/210‑1 (MQ=255) gACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTc < 2:909274/162‑1 (MQ=33) gACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCa > 2:650800/1‑191 (MQ=40) gCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGc‑c < 1:650802/191‑1 (MQ=40) ccGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGa > 2:1123608/1‑219 (MQ=255) gTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCa < 1:1488510/169‑1 (MQ=37) gTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCa > 2:1488507/1‑169 (MQ=37) gTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAA‑CACCGCCTTGGCCCCCGACCTGGCCGTGACCCTGAGCAACCACGCCCac > 2:407420/1‑230 (MQ=11) aGCGGCGCAGATGCGTGGAAGTTCGAAAACCGGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACt < 1:483678/168‑1 (MQ=37) cAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACt < 2:1418912/161‑1 (MQ=38) cGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCa < 2:894570/222‑1 (MQ=40) ttCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGC‑CGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAgcg < 1:972081/235‑1 (MQ=255) cGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAgcgcgc > 1:1252240/1‑236 (MQ=255) cGAAAACCTGAACATGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTAATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGcc > 1:921952/1‑220 (MQ=255) aaaaCCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCCTCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTg < 2:1006651/182‑1 (MQ=255) aaaaCCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTg > 1:1006653/1‑182 (MQ=255) aaaCCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAgcgcg < 2:776826/232‑1 (MQ=255) aacctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATc > 2:915874/1‑204 (MQ=255) ctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCacga > 1:1094508/1‑236 (MQ=255) aaGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCaacaac > 2:305361/1‑180 (MQ=255) aaGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCaacaac < 1:305363/180‑1 (MQ=255) cccGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTg < 1:1124117/160‑1 (MQ=255) aGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAgg < 1:657167/227‑1 (MQ=255) aGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCAACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGt > 1:1397994/1‑236 (MQ=255) aCTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTa < 1:944570/236‑1 (MQ=255) aCTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTa < 1:378237/236‑1 (MQ=255) tACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGACACCAGCGCGcc > 2:717575/1‑201 (MQ=255) aCCGTCACTGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGACCGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTg < 2:347652/129‑1 (MQ=255) gTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATg < 1:363624/223‑1 (MQ=255) tCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGAcc > 2:100285/1‑71 (MQ=31) cTGACGAGCCAGGCACTCCAAGCAAGGAAAGCGACATCGTCAAGGTCACCAACAGGGCAGACCAGACCTCGGTAGCCGAGAACGACAAACCGACCTTCAATATGCACGTCAATCAGA‑CGCTGGGCCACGACATGCTCGt > 2:1443779/1‑139 (MQ=14) cgACGAGCCAGGCACACCAGGTAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTg < 2:807281/138‑1 (MQ=255) aCGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGc < 1:400711/236‑1 (MQ=255) cGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCacgacg < 1:915876/203‑1 (MQ=255) ggCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTc > 2:48410/1‑75 (MQ=34) ggCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAg > 1:12395/1‑236 (MQ=255) cTCCTGTCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGa < 2:1294034/115‑1 (MQ=255) cAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGAt < 2:1252237/200‑1 (MQ=255) ggCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCAcc > 2:648080/1‑71 (MQ=38) aTCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGa < 1:194687/236‑1 (MQ=255) tCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTgg > 2:504434/1‑234 (MQ=255) gTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCACGTCTGCTGTGGatg < 1:994978/235‑3 (MQ=255) ggTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGcc > 2:719267/1‑197 (MQ=255) ggTCACCATCACGGCCGACCAGACCGCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGa < 2:265462/174‑1 (MQ=255) tCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGt < 1:694307/236‑1 (MQ=255) gcACCATCACCGCCGACCAGGCCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGc < 1:31551/193‑1 (MQ=255) ccATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGa > 1:611700/1‑82 (MQ=255) ccATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGa < 2:611698/82‑1 (MQ=255) ccATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTcg < 2:546059/215‑1 (MQ=255) caccACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAgg < 2:158235/162‑1 (MQ=255) aTCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTcggcgg > 2:1485487/1‑217 (MQ=255) tCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCg > 1:1090639/1‑87 (MQ=255) ggCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTac < 1:353194/142‑1 (MQ=255) gCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCGtt < 2:502427/233‑1 (MQ=255) ccGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCa > 1:846656/1‑219 (MQ=255) ccGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGa > 1:1371036/1‑78 (MQ=255) ccGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGa < 2:1371033/78‑1 (MQ=255) ccGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCa > 2:730525/1‑145 (MQ=255) ccGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCGtt > 1:488464/1‑232 (MQ=255) cGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATct > 1:1261905/1‑112 (MQ=255) aCCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGc < 1:24534/57‑1 (MQ=255) aCCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGc > 2:24534/1‑57 (MQ=255) aGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACAcc > 2:622577/1‑137 (MQ=255) gACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGGGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGcc > 1:1084824/1‑176 (MQ=255) | CCAACAGCACCACGGGCTCGGCCACTGCAACCGCACCAGACAACGTCTATGTCGGCACTAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGC‑CGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCGTT > AE015451/201114‑201561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |