New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	266168 =	72 (1.050)	4 (0.070)	4/286	NT	6.3%	intergenic (+16/‑123)	gabT/PP_0215	4‑aminobutyrate aminotransferase/Response regulator
	?	AE015451	266194 =	58 (1.000)					intergenic (+42/‑97)	gabT/PP_0215	4‑aminobutyrate aminotransferase/Response regulator

CGTCCGCGCATACCTGCAGGCGGGCGTCACAGCGCACGCTGAGCAGCATCTCGCTGAGCATGTCCCGTACCCAAGGATCGCCTTCGACAATCAGTACGCTTGGTGGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/266417‑266168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaacccgcctaggcgggttttttTTATGCCCAGATAAGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACGGACTGTGTGTCAGGTTATTCAGGAGTAGTTGGCGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTCGAAGGCGATCCTTGGGTACGGGACATGCTCA  >  AE015451/266194‑266363                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTCCGCGCATACCTGCAGGCGGGCGTCACAGCGCACGCTGAGCAGCATCTCGCTGAGCATGTCCCGTACCCAAGGATCGCCTTCGACAATCAGTACGCTTGGTGGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAAACCGC                                                                                                                                                                                           >  1:857951/1‑235       CGCATACCTGCAGGCGGGCGTCACAGCGCACGCTGAGCAGCATCTCGCTGAGCATGTCCCGTACCCAAGGATCGCCTTCGACAATCAGTACGCTTGGTGGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCG                                                                                                                                                                                    <  1:1068446/236‑1               TGCAGGCGGGCGTCACAGCGCACGCTGAGCAGCATCTCGCTGAGCATGTCCCGTACCCAAGGATCGCCTTCGACAATCAGTACGCTTGGTGGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGTTTTTT                                                                                                                                                                            <  1:524682/236‑1                     CGGGCGTCACAGCGCACGCTGAGCAGCATCTCGCTGAGCATGTCCCGTACCCAAGGATCGCCTTCGACAATCAGTACGCTTGGTGGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCG                                                                                                                                                                                    >  2:616475/1‑222                                         GAGCAGCATCTCGCTGAGCATGTCCCGTACCCAAGGATCGCCTTCGACAATCAGTACGCTTGGTGGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGTTTTT                                                                                                                                                                             >  1:278991/1‑209                                                       TGAGCATGTCCCGTACCCAAGGATCGCCTTCGACAATCAGTACGCTTGGTGGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGTT                                                                                                                                                                                >  1:590477/1‑192                                                                                                        tgcGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTTGCAGCTTCCAAAGCCAGTCCTCCGACAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGTGTTTTTTTT                                                                                                                                                                          <  2:757171/146‑1                                                                                                         GGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGg                                                                                                                                                                                 >  2:254736/1‑140                                                                                                                                                                     CGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGTTTTTTTTATGCCCAGATAAGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCCTTGGAAGCTGCGACGGACc                                                                                                         >  1:1166106/1‑152                                                                                                                                                                                         CTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGTTTTTTTTATGCCCAGATAATCCGTGTGGCGCTATGGCTATCGGAGGACTGGCTTTGGAAGCTGCGACGGA                                                                                                           >  2:15108/1‑131                                                                                                                                                                                                       gccCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGTTTTTTTTATGCCCAGATAAGCCGTGTGGCGCTAT                                                                                                                                               <  1:176092/78‑1                                                                                                                                                                                                                        TGGGCATAAAAAAAACCCGCCTAGGCGGGGTTTT                                                                                                                                                                             >  2:172845/1‑34                                                                                                                                                                                                                          GGCATAAAAAAAACCCGCCTAGGCGGGTTTTTTTTATGCCCAGATAAGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACGGACTGTGTGTCAGGTTATTCAGGAGTAGTTGGCGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTCGAA                              >  1:940705/1‑175                                                                                                                                                                                                                             ATAAAAAAAACCCGCCTAGGCGGGTTTTTTTTATGCCCAGATAAGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACGGACTGTGTGTCAGGTTATTCAGGAGTAGTTGGCGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTCGAAGGCGA                         >  2:606058/1‑177                                                                                                                                                                                                                                      cCCCGCCTAGGCGGGTTTTTTTTATGCCCAGATAAGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACGGACTGTGTGTCAGGTTATTCAGGAGTAGTTGGCGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTCGAA                              <  1:235892/162‑1                                                                                                                                                                                                                                           CCTAGGCGGGTTTTTTTTATGCCGAGATAAGCCGTGGGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACGGACTGTGTGTCAGGTTATTCAGGAGTAGTTGGCGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTCGAAGGCGATCCTTGGGTACGGGACAT       <  2:616931/181‑1                                                                                                                                                                                                                                           CCTAGGCGGGTTTTTTTTATGCCCAGATAAGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACGGACTGTGTGTCAGGTTATTCAGGAGTAGTTGGCGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTCGAAGGCGATCCTTGGGTACGGGACATGCTCA  <  2:911428/186‑1                                                                                                                                                                                                                                              AGGCTGGTTTTTTTTATGCCCAGATAGGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACGGACTGTGTGTCAGGTTATTCAGGAGTAGTTGGCGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTCGAAGGCGATCCTTGGGTACGGGACATGCTCA  <  2:473618/183‑1                                                                                                                                                                                                                                                 CGGGTTTTTTTTATGCCCAGATAAGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACG                                                                                                             <  2:64694/73‑1                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTCCGCGCATACCTGCAGGCGGGCGTCACAGCGCACGCTGAGCAGCATCTCGCTGAGCATGTCCCGTACCCAAGGATCGCCTTCGACAATCAGTACGCTTGGTGGGGTGGGGGCTGCAGCGCTCATCGCCAACTACTCCTGAATAACCTGACACACAGTCCGTCGCAGCTTCCAAAGCCAGTCCTCCGATAACCATAGCGCCACACGGCTTATCTGGGCATAAAAAAAACCCGCCTAGGCGGGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/266417‑266168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaacccgcctaggcgggttttttTTATGCCCAGATAAGCCGTGTGGCGCTATGGTTATCGGAGGACTGGCTTTGGAAGCTGCGACGGACTGTGTGTCAGGTTATTCAGGAGTAGTTGGCGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTCGAAGGCGATCCTTGGGTACGGGACATGCTCA  >  AE015451/266194‑266363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.