New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	764214 =	61 (0.890)	9 (0.140)	8/322	NT	13.9%	coding (307/822 nt)	PP_0656	putative Amino acid ABC transporter, permease protein
	?	AE015451	764244 =	53 (0.810)					coding (277/822 nt)	PP_0656	putative Amino acid ABC transporter, permease protein

TCGCACCCGGTTACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/764455‑764214 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcggCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCCG  >  AE015451/764244‑764470                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCGCACCCGGTTACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           >  1:408677/1‑236        CGGTTACTGCTGACCTGGCTGGTGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           <  1:148374/229‑1                  TGACCTGTCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTGTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCC                                                                                                                                                                                                                           <  1:209453/235‑1                      CTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           <  2:704351/215‑1                                CTGTCCGGGGTGTTTGCCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           <  2:305887/205‑1                                 TGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCG                                                                                                                                                                                                                                      >  1:149655/1‑209                                            TTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           <  2:202117/193‑1                                               GTCGCCTTCTTCCTCAGCTTTGACCTGAAGGTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAG                                                                                                                                                                                             <  1:156706/236‑1                                                      TCTTCCTCAGCGTTGACCTGGAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCC                                                                                                                                                                                                                           <  1:1162326/199‑1                                                                         GAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           <  1:1127736/164‑1                                                                                                  TTTCCCAGCCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           <  2:72149/139‑1                                                                                                            TGGCCGGTTCCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           <  1:35737/129‑1                                                                                                                             cGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCAC                                                                                                                                                                                               <  1:825242/155‑1                                                                                                                               GCCCAATGGTTTTCTGCAAGGCGCCGCACTGTCCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAG                                                                                                                                                                                       <  1:836789/162‑1                                                                                                                                            CTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGC                                                                                                                                                                                           <  2:748064/145‑1                                                                                                                                                                CCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGA                                                                                                                                                                                                   <  2:442483/117‑1                                                                                                                                                                                   TCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           <  2:37268/58‑1                                                                                                                                                                                   TCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACA                                                                                                                                                                                                                                           >  1:37268/1‑58                                                                                                                                                                                                                           gGGCACGGTTATCCAACAGCGCGGCGGCAACGCCGAGCAGCACGGATACCACCATCGAGCACAGG                                                                                                                                                                                            <  2:456736/64‑1                                                                                                                                                                                                                                CGGTTATCCAACAGCGCGGCGGCAAAGCCG                                                                                                                                                                                                                          <  2:336171/30‑1                                                                                                                                                                                                                                           CAGCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCCG  >  1:519296/1‑235                                                                                                                                                                                                                                             GCGCGGCGGCAAAGCCGAGCAGCCCGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGC    <  2:676227/231‑1                                                                                                                                                                                                                                             GCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCCG  >  2:1231191/1‑233                                                                                                                                                                                                                                             GCGCGGCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCAAGCCAGGTCAGCAGTAACC                         >  2:454495/1‑210                                                                                                                                                                                                                                                  GCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAA         >  1:322978/1‑221                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCGCACCCGGTTACTGCTGACCTGGCTGGCGCTGTTCGGGCTGTTTGTCGCCTTCTTCCTCAGCTTTGACCTGAAGTTCGCCATCATTCTGGAGAAGTTTCCCAACCTGGCCGGTTTCAAGCTGGGGCCCAATGGTTTTCTGCAAGGCGCCGCACTGACCCTGTTCCTGTGCCTGTGCTCGATGGTGGTATCCGTGCTGCTCGGCTTTGCCGCCGCGCTGGCACGGTTATCCAACAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/764455‑764214 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcggCGGCAAAGCCGAGCAGCACGGATACCACCATCGAGCACAGGCACAGGAACAGGGTCAGTGCGGCGCCTTGCAGAAAACCATTGGGCCCCAGCTTGAAACCGGCCAGGTTGGGAAACTTCTCCAGAATGATGGCGAACTTCAGGTCAAAGCTGAGGAAGAAGGCGACAAACAGCCCGAACAGCGCCAGCCAGGTCAGCAGTAACCGGGTGCGAAAGCCGAACAGGCCG  >  AE015451/764244‑764470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.