| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 1161821 | 64 (0.930) | 4 (0.060) | 4/328 | NT | 6.2% | coding (784/1155 nt) | gtsD | mannose/glucose ABC transporter ‑ ATP binding subunit |
| ? | AE015451 | = 1161918 | 58 (0.870) | coding (881/1155 nt) | gtsD | mannose/glucose ABC transporter ‑ ATP binding subunit | |||||
AAGGTGGCGGTGATGAAGGACGGCATCATCCAGCAGTTCGGCACCCCGCAGCAGATCTACAACGACCCGGCCAACCAGTTCGTGGCCAGCTTCATCGGTTCGCCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1161650‑1161821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgCCCAGGGCGATCTGCTCAGGGCGGATGCCGAGGATGATCTCGCGCCCCTCAAGCGCGTCAGCAGCCTCCCCCAAGGGCAGTTCGCAGCGCGCCTGGCCGCTGTCGAGCAGCGCCAGCAAGCGGCCATCCTGCCTGGCCAGACGCACCGGAATGAAGTTCATTGGCGGCGAACCGATGAAGCTGGCCACGAACTGGTTGGCCGGGTCGTTGTAGATCTGCTGCGGGGTGCCGA < AE015451/1161918‑1161687 AAGGTGGCGGTGATGAAGGACGGCATCATCCAGCAGTTCGGCACCCCGCAGCAGATCTACAACGACCCGGCCAACCAGTTCGTGGCCAGCTTCATCGGTTCGCCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCGCCCAGGGCGATCTGCTCAGGGCGGATGCCGAGG < 1:929987/205‑1 cCGGCATCATCCAGCAGTTCGGCACCCCGCAGCAGATCTACAACGACCCGGCCAACCAGTTCGTGGCCAGCTTCATCGGTTCGCCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCGCCCAGGGCGATCTGCTCAGGGCGGATGCCGAGGATGATCTCGCGCCCCTCAAGCGCGTCAGCAG < 1:1121237/216‑1 AGCAGATCTACAACGACCCGGCCAACCAGTTCGTGGCCAGCTTCATCGGTTCGCCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAG > 2:496215/1‑121 CGGCCAACCAGTTCGTGGCCAGCTTCATCGGTTCGCCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCGCCCAGGGCGATCTGCTCAGGGCGGATGCCGAGGATGATCTCGCGCCCCTCAAGCGCGTCAG < 1:119689/166‑1 CGGCCAACCAGTTCGTGGCCAGCTTCATCGGTTCGCCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCGCCCAGGGCGATCTGCTCAGGGCGGATGCCGAGGATGATCTCGCGCCCCTCAAGCGCGTCAG > 2:119689/1‑166 AGCGCCCAGGGCGATCTGCTCAGGGCGGATGCCGAGGATGATCTCGCGCCCCTCAAGCGCGTCAGCAGCCTCCCCCAAGGGCAGTTCGCAGCGCGCCTGGCCGCTGTCGAGCAGCGCCAGCAAGCGGCCATCCTGCCTGGCCAGACGCACCGGAATGAAGTTCATTGGCGGCGAACCGATGAAGCTGGCCACGAACTGGTTGGCCGGGTCGTTGTAGATCTGCTGCGGGGTGCCGA > 1:402022/1‑236 AAGGTGGCGGTGATGAAGGACGGCATCATCCAGCAGTTCGGCACCCCGCAGCAGATCTACAACGACCCGGCCAACCAGTTCGTGGCCAGCTTCATCGGTTCGCCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1161650‑1161821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgCCCAGGGCGATCTGCTCAGGGCGGATGCCGAGGATGATCTCGCGCCCCTCAAGCGCGTCAGCAGCCTCCCCCAAGGGCAGTTCGCAGCGCGCCTGGCCGCTGTCGAGCAGCGCCAGCAAGCGGCCATCCTGCCTGGCCAGACGCACCGGAATGAAGTTCATTGGCGGCGAACCGATGAAGCTGGCCACGAACTGGTTGGCCGGGTCGTTGTAGATCTGCTGCGGGGTGCCGA < AE015451/1161918‑1161687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |