New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1203170 =	55 (0.800)	6 (0.090)	6/322	NT	10.5%	coding (999/1089 nt)	xcpY	Type II secretion pathway protein XcpY
	?	AE015451	1203194 =	50 (0.760)					coding (1023/1089 nt)	xcpY	Type II secretion pathway protein XcpY

AGGCTGGCCGCCTGTTCGGCCAGCACACGCCACTGGCCAAGCACGCGCCATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1203405‑1203170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcggcTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGGCCAGTGGCGTGTGCTGGCCGAACAGGCGGCCAGCCTCCAAGGCGGGCCCGGTTT  >  AE015451/1203194‑1203423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGCTGGCCGCCTGTTCGGCCAGCACACGCCACTGGCCAAGCACGCGCCATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCAGCAGCCGCCATATCAGGCCATGGCGGC                                                                                                                                                                                                                                        <  1:639807/236‑1  GGCTGGCCGCCTGTTCGGCCAGCACACGCCACTGGCCAAGCACGCGCCATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGC                                                                                                                                                                                                                                        <  1:793378/235‑1                                                                                         GCAGGGCGATCAGTCCCCACGCGAACGTGATGCGATGACGCTGCACCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGCACCTGCACTGTCACGCCAGCGGCAGCCGCCATCTCACGCCATcg                                                                                                                                                                                                                                            >  2:1123728/1‑142                                                                                                                   GTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCAT                                                                                                                                                                       >  1:778332/1‑187                                                                                                                     GATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGA                                                                                                                                                                                 <  1:738823/175‑1                                                                                                                     GATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGA                                                                                                                                                                                 >  2:738820/1‑175                                                                                                                                                                      CGAAGATCACTTGGCCATCTTGACCCTGCACTGTGGCGCCCGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCCGCTGGCGCCACAGTGC                                                                                                                                                                                                                    <  1:300229/91‑1                                                                                                                                                                                                     TGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGCGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGGTCGC                                                                                                                                >  1:238477/1‑144                                                                                                                                                                                                                              TCAGGCCATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGGCCAGTGGCGTGTGCTGGCCGAACAGGCGGCCAGCCTCCAAGGCGG           <  1:386194/236‑1                                                                                                                                                                                                                                      TGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATAACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTG                                                         >  2:464986/1‑182                                                                                                                                                                                                                                            CTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGGCCAGTGGCGTGTGCTGGCCGAACAGGCGGCCAGCCTCCAAGGCGGGCCCGGTTT  >  1:40032/1‑231                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGCTGGCCGCCTGTTCGGCCAGCACACGCCACTGGCCAAGCACGCGCCATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1203405‑1203170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcggcTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGGCCAGTGGCGTGTGCTGGCCGAACAGGCGGCCAGCCTCCAAGGCGGGCCCGGTTT  >  AE015451/1203194‑1203423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.