New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 141141256 (0.820)4 (0.060) 4/320 NT 7.0% coding (523/1437 nt) PP_1232 conserved exported protein of unknown function
?AE015451 = 1411433 53 (0.820)coding (502/1437 nt) PP_1232 conserved exported protein of unknown function

CGCCTGGTCGGCGCGGTTACGGGTGTCGGCAATACGTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1411170‑1411412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccggcGATGCGGGCATCGGCATGATTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACCGCATCGGTATCCAGAACCTGGAAAAAGCCGGCTACGATCCACGCAACATGCCGACCATGTTCGAGCGCCTGGCACGCCAGTATCGCTATGACGCCAAACCGCCGGAATTCCT  <  AE015451/1411433‑1411231
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
CGCCTGGTCGGCGCGGTTACGGGTGTCGGCAATACGTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGG                                                                                                                                                                                                                     >  1:1079019/1‑235
     GGTCGGCGCGGTTACGGGTGTCGGCAATACGTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCG                                                                                                                                                                                                               >  1:540202/1‑236
                            GCAATACGTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGC                                                                                                                                                                                                             >  1:603709/1‑215
                                         CGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGT                                                                                                                                                                                                                   <  2:711936/196‑1
                                           GTCACCGGGGGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCGATGCGGGCATCGGCATGATT                                                                                                                                                                                        <  1:246289/221‑1
                                                                                                                              GTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCGATGCGGGCATCGGCATGATTGCCGGCACC                                                                                                                                                                               >  1:1009905/1‑147
                                                                                                                              GTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCGATGCGGGCATCGGCATGATTGCCGGCACC                                                                                                                                                                               <  2:1009902/147‑1
                                                                                                                                                                  GATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAATCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGC                                                                                                                                                                                                             >  1:447078/1‑81
                                                                                                                                                                                                    CGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCGATGCGGGCATCGGCATGATTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACC                                                                                                                  >  2:171015/1‑138
                                                                                                                                                                                                                                                GGCGATGCGGGCATCGGCATGGTTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACCGCATCGGTATCCAGAACCTGGAAAAAGCCGGCTACGATCCACGCAACATGCCGACCATGTTCGAGCGCCTGGCACGCCAGTATCGCTATGACGCCAAACCGCCGGAATTCCT  <  1:900732/206‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
CGCCTGGTCGGCGCGGTTACGGGTGTCGGCAATACGTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1411170‑1411412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccggcGATGCGGGCATCGGCATGATTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACCGCATCGGTATCCAGAACCTGGAAAAAGCCGGCTACGATCCACGCAACATGCCGACCATGTTCGAGCGCCTGGCACGCCAGTATCGCTATGACGCCAAACCGCCGGAATTCCT  <  AE015451/1411433‑1411231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.