New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2066272 =	63 (0.920)	5 (0.090)	5/286	NT	8.7%	intergenic (+11/+30)	PP_1842/PP_1843	Glutamine amidotransferase, class I/Mg2+/Co2+ transporter
	?	AE015451	2066298 =	52 (0.900)					intergenic (+37/+4)	PP_1842/PP_1843	Glutamine amidotransferase, class I/Mg2+/Co2+ transporter

TACGGCGATTGCCGGGGTTTACGGCATGAACTTCCAGAACATGCCGGAGCTGAGCTGGCACTACGGTTACTTCGCGGTACTGGGGGTGATTGCGACGGGGTGTGCCGGGTTGTATGCCAGCTTCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGCGCGCCCGCGAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2066446‑2066272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttcgcgggcgcgcccgcgaagggGCCATCAAAGCCAACCCGATTTCTTGAAGCTGGCATACAACCCGGCACACCCCGTCGCAATCACCCCCAGTACCGCGAAGTAACCGTAGTGCCAGCTCAGCTCCGGCATGTTCTGGAAGTTCATGCCGTAAACCCCGGCAATCGCCGTAGGGAATGCCAGAATCGCCGCCCAGGCCGCGAATTTGCGCTGCACGATGCTTTGCCGTGACGA  >  AE015451/2066298‑2066508                                                                                                                                                                                                                                                                                                                                                                                                    TACGGCGATTGCCGGGGTTTACGGCATGAACTTCCAGAACATGCCGGAGCTGAGCTGGCACTACGGTTACTTCGCGGTACTGGGGGTGATTGCGACGGGGTGTGCCGGGTTGTATGCCAGCTTCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGC                                                                                                                                                                                                                                   <  2:268633/161‑1           GCCGGGGTTTACGGCATGAACTTCCAGAACATGCCGGAGCTGAGCTGGCACTACGGTTACTTCGCGGTACTGGGGGTGATTGCGACGGGGTGTGCCGGGTTGTATGCCAGCTTCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGCGCGCCCGCGAAGG                                                                                                                                                                                                                      >  2:292143/1‑164                                                                                  GGGGGTGATTGCGACGGGGTGTGCCGGGTTGTATGCCAGCTTCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGCGCGCCCGCGAAGGGGCCATCAAAGCCAACCCGATTTCTTGAAGCTGGCATACAACCCG                                                                                                                                                                         <  2:621899/138‑1                                                                                      GTGATTGCGACGGGGTGTGCCGGGTTGTATGCCAGCTTCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGG                                                                                                                                                                                                                                    >  2:1111799/1‑75                                                                                             CGACGGGGTGTGCCGGGTTGTATGCCAGCTTCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGCGCGCCCGCGAAGGGGCCATCAAAGCCAACCCGATTTCTTGAAGCTGGCATACAACCCGGCACACCCCGTCGCA                                                                                                                                                          <  2:609837/142‑1                                                                                                               TGTATGCCAGCTTCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGCGCGCCCGCGAAGGGGCCATCAAAGCCAACCCGATTTCTTGA                                                                                                                                                                                          >  1:260448/1‑92                                                                                                                           TCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGCGCGCCCGCGAAGGGGCCATCAAAGCCAACCCGATTTCTTGAAGCTGGCATACAACCCGGCA                                                                                                                                                                      >  2:738155/1‑100                                                                                                                             AAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGCGCGCCCGCGAAGGGGCCATCAAAGCCAACCCGATTTCTTGAAGCTGGCATACAACCCGGCACACCCCGTCGCAATCACCCCCAGTACCGCGAAGTAACCGTAGTGCCAGCTCAGCTCCGGCATGTTCTGGAAGTTCATGCCGTAAACCCCGGCAATCGCCGTAGGGAATGCCAGAATCGCCGCCCAGGCCGCGAATTT                             <  1:621902/235‑1                                                                                                                                                       CCTTCGCGGGCGCGCCCTCGAAGGGGCCATCAAAGCCAACCCGATTTCT                                                                                                                                                                                             <  2:456470/49‑1                                                                                                                                                              GGGCGCGCCCGCGAAGTGGCCATCAAAGCCAACCCGATTTCTTCAAGCTGGCATACAACCCGGCACACCCCGTCGCAATCACCCCCAGTACCGCGAAGTAACCGTAGTGCCAGCTCAGCTCCGGCATGTTCTGGAAGTTCATGCCGTAAACCCCGGCAATCGCCGTAGGGAATGCCAGAATCGCCGCCCAGGCCGCGAATTTGCGCT                        <  1:1205250/207‑1                                                                                                                                                                   CGCCCGCGAAGGGGCCATCAAAGCCAACCCGATTTCTTGAAGCTGGCATACAACCCGGCACACCCCGTCGCAATCACCCCCAGTACCGCGAAGTAACCGTAGTGCCAGCTCAGCTCCGGCATGTTCTGGAAGTTCATGCCGTAAACCCCGGCAATCGCCGTAGGGAATGCCAGAATCGCCGCCCAGGCCGCGAATTTGCGCTGCACGATGCTTTGCCGTGACGA  >  1:1226285/1‑224                                                                                                                                                                            AGGGGCCATCAAAGCCAACCCGATTTCTTGAAGCTGGCATACAACCCGGCACACCCCGTCGCAATCACCCCCAGTACCGCGAAGTAACCGTAGTGCCAGCTCAGCTCCGGCATGTTCTGGAAGTTCATGCCGTAAACCCCGGCAATCGCCGTAGGGAATGCCAGAATCGCCGC                                            <  2:547254/173‑1                                                                                                                                                                                                                                                                                                                                                                                                    TACGGCGATTGCCGGGGTTTACGGCATGAACTTCCAGAACATGCCGGAGCTGAGCTGGCACTACGGTTACTTCGCGGTACTGGGGGTGATTGCGACGGGGTGTGCCGGGTTGTATGCCAGCTTCAAGAAATCGGGTTGGCTTTGATGGCCCCTTCGCGGGCGCGCCCGCGAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2066446‑2066272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttcgcgggcgcgcccgcgaagggGCCATCAAAGCCAACCCGATTTCTTGAAGCTGGCATACAACCCGGCACACCCCGTCGCAATCACCCCCAGTACCGCGAAGTAACCGTAGTGCCAGCTCAGCTCCGGCATGTTCTGGAAGTTCATGCCGTAAACCCCGGCAATCGCCGTAGGGAATGCCAGAATCGCCGCCCAGGCCGCGAATTTGCGCTGCACGATGCTTTGCCGTGACGA  >  AE015451/2066298‑2066508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.