New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2242090 =	60 (0.870)	3 (0.050)	3/322	NT	5.1%	noncoding (27/76 nt)	PP_t29	tRNA‑Ala
	?	AE015451	2242107 =	54 (0.830)					noncoding (44/76 nt)	PP_t29	tRNA‑Ala

AGAAGGGAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCGCAAAACGCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGTAACCTTCGCGAAGATCCACTTGCGTGAACCCTGGCAGAAATGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCCTGCATGCCATGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2242329‑2242090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgcaggAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGG  >  AE015451/2242107‑2242288                                                                                                                                                                                                                                                                                                                                                                                                                                        AGAAGGGAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCGCAAAACGCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGTAACCTTCGCGAAGATCCACTTGCGTGAACCCTGGCAGAAATGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCCTGCATGCCAT                                                                                                                                                                                             <  1:1121493/235‑1  GAAGGGAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCGCAAAACGCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGTAACCTTCGCGAAGATCCACTTGCGTGAACCCTGGCAGAAATGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCCTGCATGCCATGC                                                                                                                                                                                           <  1:479891/236‑1                                                                                              AACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGTAACCTTCGCGAAGATCCACTTGCGTGAACCCTGGCAGAAATGGTGGAGCTAAGCGGGATCGAACCGCTTACCGCCTGCCTGCCATGCAGG                                                                                                                                                                                        >  1:811225/1‑147                                                                                                                                         GACGAAGGGGACGTAACCTTCGCGAAGATCCACTTGCGTGAACCCTGGCAGAAATGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCCTGCATGCCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCT                                                                                                                                                             <  1:815530/131‑1                                                                                                                                         GACGAAGGGGACGTAACCTTCGCGAAGATCCACTTGCGTGAACCCTGGCAGAAATGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCCTGCATGCCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCT                                                                                                                                                             >  2:815527/1‑131                                                                                                                                                    CGTAACCTTCGCGAAGATCCACTTGCGTGAACCCTGGCAGAAATGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCCTGCATGCCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTT                                                                                                                                         <  2:708790/140‑1                                                                                                                                                                                                                                           TGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGAGCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACC                         >  1:447469/1‑165                                                                                                                                                                                                                                              AGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGG  >  1:617668/1‑185                                                                                                                                                                                                                                                GAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGC                                                                   >  2:325304/1‑118                                                                                                                                                                                                                                                                                                                                                                                                                                        AGAAGGGAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCGCAAAACGCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGTAACCTTCGCGAAGATCCACTTGCGTGAACCCTGGCAGAAATGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCCTGCATGCCATGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2242329‑2242090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgcaggAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGG  >  AE015451/2242107‑2242288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.