New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 241478351 (0.740)6 (0.090) 6/322 NT 11.0% intergenic (+325/‑20) PP_2114/PP_2115 transposase/conserved protein of unknown function
?AE015451 = 2530723 NA (NA)intergenic (+142/‑39) PP_2218/PP_2219 transposase/conserved protein of unknown function

AGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2414548‑2414783
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggcctTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTTTGGTTTTGGCGGCTTTGA  <  AE015451/2530723‑2530553
                                                                                                                                                                                                                                                                                                                                                                                                                        
AGATGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGG                                                                                                                                                                                <  2:1206867/233‑1
                                                  CCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCTTCGGCGCG                                                                                                                                                                     <  1:1103016/194‑1
                                                       CGCGATGTCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGC                                                                                                                                                                               <  2:400768/179‑1
                                                                           cCCTTTTCCCCCTTACGGCGCGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCTTCGGC                                                                                                                                                                        <  1:361506/165‑1
                                                                                          CGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCGCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCAGTCCGGCCTTGCTCCCGGCAGGACCGCGCTGAAGGCCCCATCC‑TGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGG                                                                                                                                                   <  1:693634/172‑1
                                                                                                  CACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGA                                                                                                                                          >  2:611612/1‑173
                                                                                                    CTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGG                                                                                                                                        <  1:611615/173‑1
                                                                                                         TGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCCCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGGACC                                                                                                                                   <  1:1213463/173‑1
                                                                                                                                                              CCTGCGCTGCGCTCCGGGGTCCCCTCACCCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGG                                                                                                                                                                                <  2:989743/75‑1
                                                                                                                                                                                        accCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGC                                                                                                                       <  2:1210253/103‑1
                                                                                                                                                                                                                                         GCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTTTGGTTTTGGCGGCTTTGA  >  2:1192856/1‑175
                                                                                                                                                                                                                                         GCCGTCGGCGCGGTCCTGCCGG                                                                                                                                                           <  2:8045/22‑1
                                                                                                                                                                                                                                           CTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGC                                                                                                 >  2:712541/1‑78
                                                                                                                                                                                                                                                                                                                                                                                                                        
AGAAGCAAGAAGCAAGAAGCAAATTCGTCTGTTTTGACTCAGCGAACAGTCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2414548‑2414783
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggcctTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTTTGGTTTTGGCGGCTTTGA  <  AE015451/2530723‑2530553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.