New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2941321 =	65 (0.950)	6 (0.090)	6/326	NT	8.8%	coding (553/912 nt)	PP_2574	Transcriptional regulator, LysR family
	?	AE015451	2941342 =	61 (0.920)					coding (574/912 nt)	PP_2574	Transcriptional regulator, LysR family

TGTCGAGCATTGCCAGGCGTTGGCCGTCATAGGTGTATTCCGAGTGCGGACGGGTTACCAGCAACGAAAAACCGAAACCCTGACCGACCATGCCGCGCACCATCTCGATCGACGGTGAACTGAAGACGATGTTCGGTGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2941558‑2941321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacctgTGCCCGGAGCCGATGATCCTGCTGGACGTGGCCCC  >  AE015451/2941342‑2941376                                                                                                                                                                                                                                                                                   TGTCGAGCATTGCCAGGCGTTGGCCGTCATAGGTGTATTCCGAGTGCGGACGGGTTACCAGCAACGAAAAACCGAAACCCTGACCGACCATGCCGCGCACCATCTCGATCGACGGTGAACTGAAGACGATGTTCGGTGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGA                                         <  2:1062851/234‑1                                         CGAGTGCGGACGGGTTACCAGCAACGAAAAACCGAAACCCTGACCGACCATGCCGCGCACCATCTCGATCGACGGTGAACTGAAGACGATGTTCGGTGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGA                                         >  2:891314/1‑194                                                                     AAACCGAAACCCTGACCGACCATGCCGCGCACCATCTCGATCGACGGTGAACTGAAGACGATGTTCGGTGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGTGCCCGGAGCCGATGATCCT                 <  2:1006180/190‑1                                                                         CGAAACCCTGACCGACCATGCCGCGCACCATCTCGATCGACGGTGAACTGAAGACGATGTTCGGTGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGGGCCCGGAGCCGATGATCCTGCTGG            <  1:1229325/191‑1                                                                            agCCCTGCCCGACCATGCCGCGCACCAGCTCGATCGACGGTGAACTGAAGACGATGTTCGGTGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGTGCCCGGAGCCGA                        <  1:220293/174‑1                                                                                                                                    TTCGGTGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGTGCCCGGAGCCGATGATCCTGCTGGACGTGGCCCC  <  1:23847/142‑1                                                                                                                                                      TCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGTGCCCGGAGCCGATGATCCTGCTGGACGTGGCCC   >  1:959597/1‑123                                                                                                                                                      TCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGTGCCCGGAGCCGATGATCCTGCTGGACGTGGCCC   <  2:959594/123‑1                                                                                                                                                                                                                                                                                   TGTCGAGCATTGCCAGGCGTTGGCCGTCATAGGTGTATTCCGAGTGCGGACGGGTTACCAGCAACGAAAAACCGAAACCCTGACCGACCATGCCGCGCACCATCTCGATCGACGGTGAACTGAAGACGATGTTCGGTGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2941558‑2941321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacctgTGCCCGGAGCCGATGATCCTGCTGGACGTGGCCCC  >  AE015451/2941342‑2941376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.