New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3970595 =	NA (NA)	7 (0.110)	7/306	NT	NA	coding (514/1536 nt)	PP_3501	transposase
	?	AE015451	3970611 =	NA (NA)					coding (530/1536 nt)	PP_3501	transposase

AGCGTGAATCACGCCCTGGTTCAGCACCGCTTCACGTAGTGCATCGACCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3970837‑3970595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATTCACGCTGATGAAA  >  AE015451/3970611‑3970844                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGCGTGAATCACGCCCTGGTTCAGCACCGCTTCACGTAGTGCATCGACCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTA                                                                                                                                                                                                                                                   <  1:1257429/236‑1                CTGGTTCAGCACCGCTTCACGTAGTGCATCGACCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACC                                                                                                                                                                                                                                                 >  2:1038158/1‑223                                              GACCAGGGGCTGGAGTCGCACCCCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGAGCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACC                                                                                                                                                                                                                                                 <  2:75996/193‑1                                                   GTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTA                                                                                                                                                                                                                                                   >  2:1257139/1‑186                                                                   ACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTAC                                                                                                                                                                                                                                                  >  1:22008/1‑171                                                                   ACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGT                                                                                                                                                                                                                                                    >  2:329536/1‑169                                                                          TGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTA                                                                                                                                                                                                                                                   <  1:102958/163‑1                                                                            cCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATGTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAG                                                                                                                                                                                                                                          <  1:968575/169‑1                                                                               GACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGG                                                                                                                                                                                                                                               <  1:1038161/162‑1                                                                                         GCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACA                                                                                                                                                                                                                                >  1:1124977/1‑167                                                                                                     CGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTA                                                                                                                                                                                                                                                   <  2:478419/136‑1                                                                                                     CGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCC                                                                                                                                                                                                                                                       >  1:578352/1‑132                                                                                                     CGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCC                                                                                                                                                                                                                                                       <  2:578349/132‑1                                                                                                                                                                      AAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGCGACCATTGTCGGTAACCTGCGC                                                                                                                                                                                                                                                        >  1:876029/1‑66                                                                                                                                                                             GCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCT                                                                                                                                                             <  2:436605/150‑1                                                                                                                                                                                ACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGGGGAAATCT                                                                                                                                         >  1:997830/1‑167                                                                                                                                                                                      ACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCG                                                                                                                                                                                                                 <  2:704628/89‑1                                                                                                                                                                                          GGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGT                                                                                                                                                                                                                                                    <  2:635978/50‑1                                                                                                                                                                                               AGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTG                                                                                                                                                                                                                                                           >  1:634525/1‑38                                                                                                                                                                                                    GCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACT                                                                                                                                                                    >  1:680447/1‑120                                                                                                                                                                                                     CCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCC                                                             <  1:436608/222‑1                                                                                                                                                                                                         CGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGC                                                                                                                      >  2:1124974/1‑161                                                                                                                                                                                                                                  CTGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTG                              >  1:68208/1‑224                                                                                                                                                                                                                                      GCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATT               >  1:924248/1‑235                                                                                                                                                                                                                                       CCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGCAGCGGTGCTGAACCAGGGCGTGATTCA             >  1:567689/1‑236                                                                                                                                                                                                                                       CCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGACTTGCTGGCCCATGTGATGGTGGTCGAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGTCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGA                                        <  2:668399/209‑1                                                                                                                                                                                                                                        CGGTACCGGCGCAGGTTCTCGACAACGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTC                                                                                                              <  2:22735/138‑1                                                                                                                                                                                                                                        CGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGT                                                                           <  1:1145515/173‑1                                                                                                                                                                                                                                         GGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGA                                        <  2:709159/207‑1                                                                                                                                                                                                                                          GTACCGTCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACT                                                          <  2:485531/188‑1                                                                                                                                                                                                                                           TACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCAC                                                           >  1:1257142/1‑186                                                                                                                                                                                                                                           TACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCG                                                                                                             <  1:478422/136‑1                                                                                                                                                                                                                                           TACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGC                                                                                                                                                     >  2:137056/1‑96                                                                                                                                                                                                                                            ACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCC                                                                                                                                                                                                  <  1:635981/50‑1                                                                                                                                                                                                                                             CCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGTCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGAC                                                                    <  2:399901/175‑1                                                                                                                                                                                                                                             CCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATTCACGCTG        >  1:602425/1‑235                                                                                                                                                                                                                                             CCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCGTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCCGGAGAAAATCTTTGGCCGCGCCGGGCTGG                                                                                                                       >  2:266259/1‑124                                                                                                                                                                                                                                                   CAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATTCACGCTGATGAAA  <  1:879470/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGCGTGAATCACGCCCTGGTTCAGCACCGCTTCACGTAGTGCATCGACCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCGGTCGGGACACCTTTGTCGATAACCTGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3970837‑3970595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTACGTGAAGCGGTGCTGAACCAGGGCGTGATTCACGCTGATGAAA  >  AE015451/3970611‑3970844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.