New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 399147741 (0.600)10 (0.150) 8/318 NT 21.6% coding (150/894 nt) PP_3517 conserved exported protein of unknown function
?AE015451 = 3991496 34 (0.530)coding (131/894 nt) PP_3517 conserved exported protein of unknown function

CGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAAGGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3991242‑3991477
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggccaggAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACAGCACAGCATCGACATGTCAGGCGAGGGCAAGGCCATCCTGGCGGTGGGCGCCGGTCACTGGACCTTGCCCATACCGCTGACCAGAACCAGCCAGGGCTGGCGCTTCGACCTCAAGGC  <  AE015451/3991496‑3991262
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
CGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAAGGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGG                                                                                                                                                                                                                                             >  2:731625/1‑236
                            GTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAAGGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCC                                                                                                                                                                                                                                                <  1:595035/205‑1
                                                                             CAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAAC                                                                                                                                                                                                                                                      >  2:248466/1‑150
                                                                                 GACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGG                                                                                                                                                                                                                                             <  2:420363/155‑1
                                                                                 GACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGG                                                                                                                                                                                                                                             >  1:420366/1‑155
                                                                                                                                                               AGGTATCCACATCGCTGCGCTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTG                                                                                                                                                                                                                                                    >  2:698621/1‑70
                                                                                                                                                               AGGTATCCACATCGCTGCGCTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTG                                                                                                                                                                                                                                                    <  1:698624/70‑1
                                                                                                                                                                               agGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACAGCACAGCATCGACATGTCAGGCGAGGGCAAGGCCATCCTGGCGGTGGGCGCCGGTC                                                               <  1:957832/233‑1
                                                                                                                                                                                   TGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACA                                                                                                                       >  2:1213229/1‑175
                                                                                                                                                                                               CGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGGGGTGTGCAACGCAGCGATGTGGATACC                                                                                                                                              >  2:957829/1‑140
                                                                                                                                                                                                    TATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAG                                                                                                                                                           <  1:250439/122‑1
                                                                                                                                                                                                       GTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACAGCACAGCATCGACATGTCAGGCGAGGGCAAGGCCATCCTGGCGGTGGGCGCCGGTCACTGGACCTTGCCCATACCGCT                                         >  2:636360/1‑233
                                                                                                                                                                                                                 CAGTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACAGCACAGCATCGACATGTCAGGCGAGGGCAAGGCCATCCTGGCGGT                                                                          >  1:1137713/1‑190
                                                                                                                                                                                                                 CAGTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATAACTTTCTCGAGCAGTATCGC                                                                                                                            >  2:677224/1‑140
                                                                                                                                                                                                                 CAGTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGT                                                                                                                                                                         >  2:250439/1‑95
                                                                                                                                                                                                                   GTCATCGCCCAGCAACTGGGCCAGGAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGCGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGCGCAGGATCGCGCACAGCACAGCAg                                                                                                              >  1:915070/1‑151
                                                                                                                                                                                                                        CGCCCAGCAACTGGGCCAGGAAAAACCTGATGATGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACAGCACAGCATCGACATGTCAGGCGAGGGCAAGGCCATCCTGGCGGTGCGCGCCGGGCAATG                                                           >  2:646447/1‑198
                                                                                                                                                                                                                                     GGCCAGGAAAAACCTGATGAAGCCCGCCGGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGGGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGC                                                                                                                            <  2:237111/120‑1
                                                                                                                                                                                                                                           GAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACAGCACAGCATCGACATGTCAGGCGAGGGCAAGGCCATCCTGGCGGTGGGCGCCGGTCACTGGACCTTGCCCATACCGCTGACCAGAACCAGCCAGGGCTGGCGCTTCGACCTCAAGGC  <  1:414762/236‑1
                                                                                                                                                                                                                                           GAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACAGCACAGCATCGACATGTCAGGCGAGGGCAAGGCCATCCTGGCGGTGGGCGCCGGTCACTGGACCTTGCCCATACCGCTGACCAGAACCAGCCAGGGCTGGCGCTTCGACCTCAAGGC  <  1:190866/236‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
CGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAAGGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3991242‑3991477
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggccaggAAAAACCTGATGAAGCCCGCCTGGCCCAGTTGCTGGGCGATGACTGGCGCACCTACATACCGCGCGGTGGTGTGCAACGCAGCGATGTGGATACCTTTCTCGAGCAGTATCGCGCACAGCACAGCATCGACATGTCAGGCGAGGGCAAGGCCATCCTGGCGGTGGGCGCCGGTCACTGGACCTTGCCCATACCGCTGACCAGAACCAGCCAGGGCTGGCGCTTCGACCTCAAGGC  <  AE015451/3991496‑3991262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.